Evidence map›Paper›PMID 30837345›Full record

ArticlemBio2019

Introducing THOR, a Model Microbiome for Genetic Dissection of Community Behavior.

Gabriel L Lozano, Juan I Bravo, Manuel F Garavito Diago, Hyun Bong Park, Amanda Hurley, S Brook Peterson, Eric V Stabb, Jason M Crawford, Nichole A Broderick, Jo Handelsman

Abstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Review
  2. TheApplied and environmental microbiology · 2026
    Article
  3. Confrontations betweenApplied and environmental microbiology · 2026
    Article
  4. Article
  5. Article
  6. Design, processing, and modeling for longitudinal multiomics microbiome data.Frontiers in cellular and infection microbiology · 2026
    Review
  7. Constraint-Based Metabolic Modeling Approach for Microbial Communities.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Microbial community interactions on a chip.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Co-existence of two antibiotic-producing marine bacteria:Applied and environmental microbiology · 2024
    Article
  18. mBio · 2024
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gabriel L LozanoWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0001-9327-4470
Juan I BravoWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Manuel F Garavito DiagoWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Hyun Bong ParkDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
Amanda HurleyWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
S Brook PetersonDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Eric V StabbDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Jason M CrawfordDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
Nichole A BroderickDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.ORCID 0000-0002-6830-9456
Jo HandelsmanWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, USA jo.handelsman@wisc.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The quest to manipulate microbiomes has intensified, but many microbial communities have proven to be recalcitrant to sustained change. Developing model communities amenable to genetic dissection will underpin successful strategies for shaping microbiomes by advancing an understanding of community interactions. We developed a model community with representatives from three dominant rhizosphere taxa, the

Indexed as

Microbial InteractionsMicrobiotaSoil MicrobiologyBacillotaBacteroidetesModels, BiologicalProteobacteriaRhizosphereBacillus cereusbiofilmcolony expansionemergent propertiesFlavobacterium johnsoniaeinhibitory networkmodel communityPseudomonas koreensisrhizosphere

Identifiers

PMID30837345
PMCPMC6401489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.