Evidence map›Paper›PMID 30837332›Full record

ArticlemBio2019

The Evolution of SlyA/RovA Transcription Factors from Repressors to Countersilencers in

W Ryan Will, Peter Brzovic, Isolde Le Trong, Ronald E Stenkamp, Matthew B Lawrenz, Joyce E Karlinsey, William W Navarre, Kara Main-Hester, Virginia L Miller, Stephen J Libby and 1 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. The phytopathogenmLife · 2024
    Article
  7. Review
  8. Mapping direct and indirect MarA/SoxS/Rob/RamA regulons inMicrobiology (Reading, England) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. The Small RNA MicC DownregulatesJournal of bacteriology · 2022
    Article
  13. Article
  14. Article
  15. How the PhoP/PhoQ System Controls Virulence and MgMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  16. Article
  17. Article
  18. The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control inInternational journal of molecular sciences · 2021
    Article
  19. Review
  20. Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

W Ryan WillDepartment of Laboratory Medicine, University of Washington, Seattle, Washington, USA.
Peter BrzovicDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Isolde Le TrongDepartment of Biological Structure, University of Washington, Seattle, Washington, USA.
Ronald E StenkampDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Matthew B LawrenzDepartment of Microbiology and Immunology and the Center for Predictive Medicine for Biodefense and Emerging Infectious Diseases, University of Louisville School of Medicine, Louisville, Kentucky, USA.
Joyce E KarlinseyDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
William W NavarreDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Kara Main-HesterDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Virginia L MillerDepartment of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.
Stephen J Libby *Department of Laboratory Medicine, University of Washington, Seattle, Washington, USA.
Ferric C Fang *Department of Laboratory Medicine, University of Washington, Seattle, Washington, USA fcfang@uw.edu.ORCID 0000-0002-3243-110X
University of Washington · USUniversity of Louisville · USUniversity of North Carolina at Chapel Hill · US

Funding

THE SALMONELLA TYPHIMURIUM SIGMAE REGULONR01AI044486 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1999 to 2016
$4.9M
NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR01AI039557 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1997 to 2012
$4.1M
Typhoid Pathogenesis and ImmunityR01AI112640 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2015 to 2019
$2.1M
Antimicrobial Actions of Nitric OxideR01AI118962 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2016 to 2020
$1.9M
Unconventional Interactions of Human Ubiquitin Conjugating EnzymesR01GM098503 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRZOVIC, PETER S · 2012 to 2016
$1.5M
Typhoid Pathogenesis and ImmunityR56AI112640 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2020 to 2020
$574k
NIAID NIH HHS R01 AI039557NIAID NIH HHS R01 AI044486NIAID NIH HHS R01 AI112640NIAID NIH HHS R01 AI118962NIAID NIH HHS R56 AI112640NIGMS NIH HHS R01 GM098503
6 · The paper itself

Abstract

Gene duplication and subsequent evolutionary divergence have allowed conserved proteins to develop unique roles. The MarR family of transcription factors (TFs) has undergone extensive duplication and diversification in bacteria, where they act as environmentally responsive repressors of genes encoding efflux pumps that confer resistance to xenobiotics, including many antimicrobial agents. We have performed structural, functional, and genetic analyses of representative members of the SlyA/RovA lineage of MarR TFs, which retain some ancestral functions, including repression of their own expression and that of divergently transcribed multidrug efflux pumps, as well as allosteric inhibition by aromatic carboxylate compounds. However, SlyA and RovA have acquired the ability to countersilence horizontally acquired genes, which has greatly facilitated the evolution of

Indexed as

Evolution, MolecularGene Expression Regulation, BacterialGene SilencingEnterobacteriaceaeGene Transfer, HorizontalTranscription FactorsTranscription Factorscountersilencingevolutiongene regulationSlyAtranscription factors

Identifiers

PMID30837332
PMCPMC6401476
OpenAlexW2950107648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.