Evidence map›Paper›PMID 30837309›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Fast pressure-jump all-atom simulations and experiments reveal site-specific protein dehydration-folding dynamics.

Maxim B Prigozhin, Yi Zhang, Klaus Schulten, Martin Gruebele, Taras V Pogorelov

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Threading single proteins through pores to compare their energy landscapes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Initiating Coarse-Grained MD Simulations for Membrane-Bound Proteins.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maxim B PrigozhinDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Yi ZhangBeckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Klaus SchultenBeckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Martin GruebeleDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801; mgruebel@illinois.edu pogorelo@illinois.edu.
Taras V PogorelovDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801; mgruebel@illinois.edu pogorelo@illinois.edu.ORCID 0000-0001-5851-7721

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Protein refolding and transient aggregate formation studied by very fast pressureR01GM093318 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GRUEBELE, MARTIN · 2010 to 2020
$3.1M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM093318NIGMS NIH HHS R01 GM116961
6 · The paper itself

Abstract

As theory and experiment have shown, protein dehydration is a major contributor to protein folding. Dehydration upon folding can be characterized directly by all-atom simulations of fast pressure drops, which create desolvated pockets inside the nascent hydrophobic core. Here, we study pressure-drop refolding of three λ-repressor fragment (λ

Indexed as

DehydrationEscherichia coliFluorescenceKineticsMolecular Dynamics SimulationPressureProtein Conformation, alpha-HelicalProtein FoldingProteinsSolventsProteinsSolventsmolecular dynamics simulationpressure jumpprotein solvation dynamics

Identifiers

PMID30837309
PMCPMC6431218

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.