Evidence map›Paper›PMID 30836980›Full record

ArticleBMC systems biology2019

Towards embedding Caco-2 model of gut interface in a microfluidic device to enable multi-organ models for systems biology.

Dmitry Sakharov, Diana Maltseva, Evgeny Knyazev, Sergey Nikulin, Andrey Poloznikov, Sergey Shilin, Ancha Baranova, Irina Tsypina, Alexander Tonevitsky

Abstract read
In one paragraph

Article in BMC systems biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. HIF-DependentFrontiers in genetics · 2021
    Article
  8. Systems biology research at BGRS-2018.BMC systems biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dmitry SakharovSRC BioClinicum, Moscow, Russia.
Diana MaltsevaSRC BioClinicum, Moscow, Russia.
Evgeny KnyazevSRC BioClinicum, Moscow, Russia. e.knyazev@bioclinicum.com.
Sergey NikulinSRC BioClinicum, Moscow, Russia. brazor@inbox.ru.
Andrey PoloznikovSRC BioClinicum, Moscow, Russia.
Sergey ShilinSRC BioClinicum, Moscow, Russia.
Ancha BaranovaSchool of Systems Biology, George Mason University, Fairfax VA, USA.
Irina TsypinaSRC BioClinicum, Moscow, Russia.
Alexander TonevitskySRC BioClinicum, Moscow, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA cancer cell line originating from human epithelial colorectal adenocarcinoma (Caco-2 cells) serves as a high capacity model for a preclinical screening of drugs. Recent need for incorporating barrier tissue into multi-organ chips calls for inclusion of Caco-2 cells into microperfused environment.

resultsThis article describes a series of systems biology insights obtained from comparing Caco-2 models cells grown as conventional 2D layer and in a microfluidic chip. When basic electrical parameters of Caco-2 monolayers were evaluated using impedance spectrometry and MTT assays, no differences were noted. On the other hand, the microarray profiling of mRNAs and miRNAs revealed that grows on a microfluidic chip leads to the change in the production of specific miRNA, which regulate a set of genes for cell adhesion molecules (CAMs), and provide for more complete differentiation of Caco-2 monolayer. Moreover, the sets of miRNAs secreted at the apical surface of Caco-2 monolayers grown in conventional 2D culture and in microfluidic device differ.

conclusionsWhen integrated into a multi-tissue platform, Caco-2 cells may aid in generating insights into complex pathophysiological processes, not possible to dissect in conventional cultures.

Indexed as

Lab-On-A-Chip DevicesCaco-2 CellsCell AdhesionCell DifferentiationCell MembraneHumansIntestinesMicrocirculationSystems Biology2D layerCaco-2 cell linesMicrofluidic chipOn-the-chip models

Identifiers

PMID30836980
PMCPMC6399809

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.