Evidence map›Paper›PMID 30836307›Full record

ArticleMedical image analysis2019

Optimal surface segmentation with convex priors in irregularly sampled space.

Abhay Shah, Michael D Abámoff, Xiaodong Wu

Abstract read
In one paragraph

Article in Medical image analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Abhay ShahDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA.
Michael D AbámoffDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA; Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA, 52242, USA.
Xiaodong WuDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA; Department of Radiation Oncology, University of Iowa, Iowa City, IA, 52242, USA. Electronic address: xiaodong-wu@uiowa.edu.

Funding

Graph-Based Medical Image Segmentation in 3D and 4DR01EB004640 · NIBIB · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, SONKA, MILAN · 2006 to 2022
$6.1M
Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer TherapyR21CA209874 · NCI · UNIVERSITY OF IOWA · PI WU, XIAODONG · 2016 to 2017
$365k
NCI NIH HHS R21 CA209874NIBIB NIH HHS R01 EB004640
6 · The paper itself

Abstract

Optimal surface segmentation is a state-of-the-art method used for segmentation of multiple globally optimal surfaces in volumetric datasets. The method is widely used in numerous medical image segmentation applications. However, nodes in the graph based optimal surface segmentation method typically encode uniformly distributed orthogonal voxels of the volume. Thus the segmentation cannot attain an accuracy greater than a single unit voxel, i.e. the distance between two adjoining nodes in graph space. Segmentation accuracy higher than a unit voxel is achievable by exploiting partial volume information in the voxels which shall result in non-equidistant spacing between adjoining graph nodes. This paper reports a generalized graph based multiple surface segmentation method with convex priors which can optimally segment the target surfaces in an irregularly sampled space. The proposed method allows non-equidistant spacing between the adjoining graph nodes to achieve subvoxel segmentation accuracy by utilizing the partial volume information in the voxels. The partial volume information in the voxels is exploited by computing a displacement field from the original volume data to identify the subvoxel-accurate centers within each voxel resulting in non-equidistant spacing between the adjoining graph nodes. The smoothness of each surface modeled as a convex constraint governs the connectivity and regularity of the surface. We employ an edge-based graph representation to incorporate the necessary constraints and the globally optimal solution is obtained by computing a minimum s-t cut. The proposed method was validated on 10 intravascular multi-frame ultrasound image datasets for subvoxel segmentation accuracy. In all cases, the approach yielded highly accurate results. Our approach can be readily extended to higher-dimensional segmentations.

Indexed as

Tomography, Optical CoherenceUltrasonography, InterventionalAlgorithmsCoronary Artery DiseaseDeep LearningHumansImage Processing, Computer-AssistedPattern Recognition, AutomatedConvex smoothness constraintsGraph searchImage segmentationIntravascular ultrasound (IVUS)Irregularly sampledMinimum s-t cutOptical coherence tomography (OCT)Optimal surfaceRetinaSubvoxel

Identifiers

PMID30836307
PMCPMC6487211

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.