Evidence map›Paper›PMID 30834327›Full record

ArticlemSystems

Minor Isozymes Tailor Yeast Metabolism to Carbon Availability.

Patrick H Bradley, Patrick A Gibney, David Botstein, Olga G Troyanskaya, Joshua D Rabinowitz

Open access · goldAbstract read
In one paragraph

Article in mSystems. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Patrick H BradleyDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA.ORCID https://orcid.org/0000-0002-9231-8344
Patrick A GibneyLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
David BotsteinDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA.
Olga G TroyanskayaDepartment of Computer Science, Princeton University, Princeton, New Jersey, USA.
Joshua D RabinowitzDepartment of Chemistry, Princeton University, Princeton, New Jersey, USA.
Princeton University · US

Funding

lntegration and Visualization of Diverse Biological DataR01GM071966 · NIGMS · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2005 to 2022
$6.4M
NIGMS NIH HHS R01 GM071966
6 · The paper itself

Abstract

Isozymes are enzymes that differ in sequence but catalyze the same chemical reactions. Despite their apparent redundancy, isozymes are often retained over evolutionary time, suggesting that they contribute to fitness. We developed an unsupervised computational method for identifying environmental conditions under which isozymes are likely to make fitness contributions. This method analyzes published gene expression data to find specific experimental perturbations that induce differential isozyme expression. In yeast, we found that isozymes are strongly enriched in the pathways of central carbon metabolism and that many isozyme pairs show anticorrelated expression during the respirofermentative shift. Building on these observations, we assigned function to two minor central carbon isozymes, aconitase 2 (

Indexed as

cerevisiaeduplicatesgenomicsisozymesmetabolomicsparalogssystems biologytranscriptomicsyeast

Identifiers

PMID30834327
PMCPMC6392091
OpenAlexW2952817404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.