Evidence map›Paper›PMID 30833786›Full record

ArticleNature structural & molecular biology2019

The macroH2A1.2 histone variant links ATRX loss to alternative telomere lengthening.

Jeongkyu Kim, Chongkui Sun, Andy D Tran, Pei-Ju Chin, Penelope D Ruiz, Kun Wang, Richard J Gibbons, Matthew J Gamble, Yie Liu, Philipp Oberdoerffer

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  12. Histone H2A variants: Diversifying chromatin to ensure genome integrity.Seminars in cell & developmental biology · 2023
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Communication between chromatin and homologous recombination.Current opinion in genetics & development · 2021
    Review
  18. Histone dynamics during DNA replication stress.Journal of biomedical science · 2021
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Jeongkyu KimLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD, USA.
Chongkui SunLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA.
Andy D TranLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD, USA.
Pei-Ju ChinLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA.
Penelope D RuizDepartment of Molecular Pharmacology, Albert Einstein College of Medicine, New York, NY, USA.
Kun WangLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA.
Richard J GibbonsMedical Research Council, Molecular Hematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliff Hospital, Oxford, UK.
Matthew J GambleDepartment of Molecular Pharmacology, Albert Einstein College of Medicine, New York, NY, USA.
Yie LiuLaboratory of Molecular Gerontology, National Institute on Aging, NIH, Baltimore, MD, USA. liuyie@mail.nih.gov.ORCID http://orcid.org/0000-0003-1695-3837
Philipp OberdoerfferLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD, USA. philipp.oberdoerffer@nih.gov.ORCID http://orcid.org/0000-0002-2484-1440
National Institute on Aging · USNational Institutes of Health · USAlbert Einstein College of Medicine · USUnited States Food and Drug Administration · USUniversity of Oxford · GB

Funding

TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
Structure nucleases in telomere secondary structure resolutionZIAAG000754 · NIA · NATIONAL INSTITUTE ON AGING · PI LIU, YIE · 2013 to 2024
$8.4M
Exploring therapeutic intervention of telomere biology diseasesZIAAG000698 · NIA · NATIONAL INSTITUTE ON AGING · PI LIU, YIE · 2019 to 2025
$6.9M
Investigating the role of DNA breaks in mammalian agingZIABC011283 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OBERDOERFFER, PHILIPP · 2010 to 2019
$4.3M
RNAi screen for modifiers of homologous recombinationZIABC011282 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OBERDOERFFER, PHILIPP · 2010 to 2017
$3.7M
The role of macroH2A variants in cancer and senescenceR01CA155232 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GAMBLE, MATTHEW J · 2012 to 2021
$3.7M
Exploring a reliable and sensitive method to detect telomere dysfunction in the aging population and premature-aging diseasesZIAAG000789 · NIA · NATIONAL INSTITUTE ON AGING · PI LIU, YIE · 2018 to 2022
$2.2M
Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA BC011282Medical Research Council MC_UU_00016/3Medical Research Council MC_UU_12009/3NCI NIH HHS R01 CA155232NIGMS NIH HHS T32 GM007491
6 · The paper itself

Abstract

The growth of telomerase-deficient cancers depends on the alternative lengthening of telomeres (ALT), a homology-directed telomere-maintenance pathway. ALT telomeres exhibit a unique chromatin environment and generally lack the nucleosome remodeler ATRX, pointing to an epigenetic basis for ALT. Recently, we identified a protective role for the ATRX-interacting macroH2A1.2 histone variant during homologous recombination and replication stress (RS). Consistent with an inherent susceptibility to RS, we show that human ALT telomeres are highly enriched for macroH2A1.2. However, in contrast to ATRX-proficient cells, ALT telomeres transiently lose macroH2A1.2 during acute RS to facilitate DNA double-strand break (DSB) formation, a process that is almost completely prevented by ectopic ATRX expression. Telomeric macroH2A1.2 is re-deposited in a DNA damage response (DDR)-dependent manner to promote homologous recombination-associated ALT pathways. Our findings thus identify the dynamic exchange of macroH2A1.2 on chromatin as an epigenetic link among ATRX loss, RS-induced DDR initiation and telomere maintenance via homologous recombination.

Indexed as

Cell Line, TumorChromatinDNA Breaks, Double-StrandedDNA RepairHEK293 CellsHeLa CellsHistonesHomologous RecombinationHumansTelomeraseTelomere HomeostasisX-linked Nuclear ProteinATRX protein, humanChromatinHistonesmacroH2A histoneTelomeraseX-linked Nuclear Protein

Identifiers

PMID30833786
PMCPMC6537592
OpenAlexW2919734852

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.