ArticleNature biotechnology2019
Federated discovery and sharing of genomic data using Beacons.
Erratum issuedAbstract readLetter
In one paragraph
Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 63 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
63 citing papers in PubMed, 1 synthesis or guideline pooled it.
- The Progenetix oncogenomic resource in 2021.Database : the journal of biological databases and curation · 2021Pooled it
- Model Context Protocol: The unexpected catalyst of a bioinformatics interoperability revolution.PLoS computational biology · 2026Article
- Global approaches to infectious disease surveillance and modeling.Nature medicine · 2026Review
- The GA4GH Categorical Variation Representation Specification: A Unified Computational Framework for Reasoning over Genomic Variant Categories.bioRxiv : the preprint server for biology · 2026Article
- Convergence of machine learning and genomics for precision oncology.Nature reviews. Cancer · 2026Review
- The Portuguese Beacon: sharing genomic variant data safely.Database : the journal of biological databases and curation · 2026Article
- Toward Responsible and Sustainable Data Sharing in Large-scale Cohort-based Genomic Research.Genomics, proteomics & bioinformatics · 2025Article
- AskBeacon-performing genomic data exchange and analytics with natural language.Bioinformatics (Oxford, England) · 2025Article
- Proxy panels enable privacy-aware outsourcing of genotype imputation.Genome research · 2025Article
- A call to action to scale up research and clinical genomic data sharing.Nature reviews. Genetics · 2025Review
- Article
- Advancing precision oncology with AI-powered genomic analysis.Frontiers in pharmacology · 2025Review
- Article
- Genomic privacy and security in the era of artificial intelligence and quantum computing.Discover computing · 2025Review
- Patient-Centric Approach to Personalized Electronic Medical Records via QR Code in Japan.Interactive journal of medical research · 2024Article
- Data access arrangements in genomic research consortia.Scientific reports · 2024Review
- A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data.Journal of integrative bioinformatics · 2024Article
- Privacy-Enhancing Technologies in Biomedical Data Science.Annual review of biomedical data science · 2024Review
- Sharing sensitive data in life sciences: an overview of centralized and federated approaches.Briefings in bioinformatics · 2024Review
- An interconnected data infrastructure to support large-scale rare disease research.GigaScience · 2024Article
3 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
26 authors.
Marc FiumeDNAstack, Toronto, Ontario, Canada. marc@dnastack.com.
Miroslav CupakDNAstack, Toronto, Ontario, Canada.
Stephen KeenanGlobal Alliance for Genomics and Health, Toronto, Ontario, Canada.
Jordi RamblaCentre de Regulació Genòmica, Barcelona, Spain.
Sabela de la TorreCentre de Regulació Genòmica, Barcelona, Spain.
Stephanie O M DykeCentre of Genomics and Policy, Department of Human Genetics, McGill University, Montreal, Quebec, Canada.
Anthony J BrookesDepartment of Genetics, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0001-8686-0017
Knox CareyGenecloud, Sunnyvale, CA, USA.
David LloydELIXIR Hub, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Peter GoodhandGlobal Alliance for Genomics and Health, Toronto, Ontario, Canada.
Maximilian HaeusslerGenomics Institute, University of California at Santa Cruz, Santa Cruz, CA, USA.
Michael BaudisDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9903-4248
Heinz StockingerSIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Lena DolmanGlobal Alliance for Genomics and Health, Toronto, Ontario, Canada.
Ilkka LappalainenEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Juha TörnroosCSC - IT Center for Science Ltd, Espoo, Finland.
Mikael LindenCSC - IT Center for Science Ltd, Espoo, Finland.ORCID http://orcid.org/0000-0002-3634-3756
J Dylan SpaldingEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID http://orcid.org/0000-0002-4285-2493
Saif Ur-RehmanEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Angela PageGlobal Alliance for Genomics and Health, Toronto, Ontario, Canada.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID http://orcid.org/0000-0002-3897-7955
Stephen SherryNational Center for Biotechnology Information, US National Library of Medicine, Bethesda, MD, USA.
David HausslerGenomics Institute, University of California at Santa Cruz, Santa Cruz, CA, USA.
Susheel VarmaELIXIR Hub, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID http://orcid.org/0000-0003-1687-2754
Gary SaundersELIXIR Hub, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Serena ScollenELIXIR Hub, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Funding
National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7MTraining SubprojectU54HG007990 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, PATTERSON, DAVID · 2014 to 2018
$14.8MNHGRI NIH HHS U54 HG007990Wellcome Trust 098051Wellcome Trust 201535Wellcome Trust 201535/Z/16/Z
Abstract
PubMed holds no abstract for this paper.
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Information DisseminationGenomicsHumansInformation Storage and Retrieval
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Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.