Evidence map›Paper›PMID 30833663›Full record

ArticleScientific reports2019

Integrated Analysis of Whole Exome Sequencing and Copy Number Evaluation in Parkinson's Disease.

Eman Al Yemni, Dorota Monies, Thamer Alkhairallah, Saeed Bohlega, Mohamed Abouelhoda, Amna Magrashi, Abeer Mustafa, Basma AlAbdulaziz, Mohamed Alhamed, Batoul Baz and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Calsyntenin-3 suppresses inflammation via inhibition of TLR N-glycosylation and membrane localization.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Eman Al YemniBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.
Dorota MoniesSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Thamer AlkhairallahDepartment of Neurosciences, King Faisal Specialist Hospital and Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Saeed BohlegaDepartment of Neurosciences, King Faisal Specialist Hospital and Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Mohamed AbouelhodaSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Amna MagrashiBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.
Abeer MustafaBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.
Basma AlAbdulazizBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.
Mohamed AlhamedDepartment of Genetics, King Faisal Specialist Hospital and Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.ORCID 0000-0002-7207-6122
Batoul BazBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.ORCID 0000-0003-0135-4946
Ewa GoljanSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.ORCID 0000-0001-6235-3387
Renad AlbarSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Amjad JabaanSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Tariq FaquihSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Shazia SubhaniSaudi Human Genome Program, King Abdulaziz City for Science and Technology, P.O Box 6086, Riyadh, 11442, Saudi Arabia.
Wafa AliDepartment of Genetics, King Faisal Specialist Hospital and Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Jameela ShinwariBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia.
Bashayer Al-MubarakBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia. BAl-Mubarak@kfshrc.edu.sa.
Nada Al-TassanBehavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Centre, P.O Box 3354, Riyadh, 11211, Saudi Arabia. naltassan@kfshrc.edu.sa.ORCID 0000-0001-9076-0334
King Abdulaziz City for Science and Technology · SAKing Faisal Specialist Hospital & Research Centre · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic studies of the familial forms of Parkinson's disease (PD) have identified a number of causative genes with an established role in its pathogenesis. These genes only explain a fraction of the diagnosed cases. The emergence of Next Generation Sequencing (NGS) expanded the scope of rare variants identification in novel PD related genes. In this study we describe whole exome sequencing (WES) genetic findings of 60 PD patients with 125 variants validated in 51 of these cases. We used strict criteria for variant categorization that generated a list of variants in 20 genes. These variants included loss of function and missense changes in 18 genes that were never previously linked to PD (NOTCH4, BCOR, ITM2B, HRH4, CELSR1, SNAP91, FAM174A, BSN, SPG7, MAGI2, HEPHL1, EPRS, PUM1, CLSTN1, PLCB3, CLSTN3, DNAJB9 and NEFH) and 2 genes that were previously associated with PD (EIF4G1 and ATP13A2). These genes either play a critical role in neuronal function and/or have mouse models with disease related phenotypes. We highlight NOTCH4 as an interesting candidate in which we identified a deleterious truncating and a splice variant in 2 patients. Our combined molecular approach provides a comprehensive strategy applicable for complex genetic disorders.

Indexed as

DNA Copy Number VariationsExome SequencingExonsFemaleGenetic Predisposition to DiseaseHumansMaleParkinson DiseaseSequence DeletionUbiquitin-Protein Ligasesparkin proteinUbiquitin-Protein Ligases

Identifiers

PMID30833663
PMCPMC6399448
OpenAlexW2920357908

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.