Evidence map›Paper›PMID 30833602›Full record

ArticleScientific reports2019

A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle.

Lotte Teufel, Katja Tummler, Max Flöttmann, Andreas Herrmann, Naama Barkai, Edda Klipp

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Lotte TeufelTheoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.
Katja TummlerTheoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.
Max FlöttmannTheoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.
Andreas HerrmannMolecular Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.
Naama BarkaiWeizmann Institute of Science, Rehovot, Israel.
Edda KlippTheoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany. edda.klipp@rz.hu-berlin.de.ORCID 0000-0002-0567-7075
Humboldt-Universität zu Berlin · DEWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae, G1 cyclins Cln1-3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for wild type and cyclin single and double knockouts over cell cycle with and without osmotic stress. Clustering of expression profiles, peak time detection of oscillating genes, integration with transcription factor network dynamics, and assignment to cell cycle phases allowed us to quantify the effect of genetic or stress perturbations on the duration of cell cycle phases. Cln1 and Cln2 showed functional differences, especially affecting later phases. Deletion of Cln3 led to a delay of START followed by normal progression through later phases. Our data and network analysis suggest mutual effects of cyclins with the transcriptional regulators SBF and MBF.

Indexed as

TranscriptomeCyclinsG1 PhaseGene Knockdown TechniquesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCyclinsSaccharomyces cerevisiae Proteins

Identifiers

PMID30833602
PMCPMC6399449
OpenAlexW2920612060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.