Evidence map›Paper›PMID 30833575›Full record

ArticleNature communications2019

Pocket similarity identifies selective estrogen receptor modulators as microtubule modulators at the taxane site.

Yu-Chen Lo, Olga Cormier, Tianyun Liu, Kendall W Nettles, John A Katzenellenbogen, Tim Stearns, Russ B Altman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yu-Chen LoDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Olga CormierDepartment of Biology, Stanford University, Stanford, CA, USA.
Tianyun LiuDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Kendall W NettlesDepartment of Integrative Structural and Computational Biology, Scripps Research Institute, Jupiter, FL, USA.
John A KatzenellenbogenDepartment of Chemistry, University of Illinois-Urbana Champaign, Champaign, IL, USA.
Tim StearnsDepartment of Biology, Stanford University, Stanford, CA, USA.
Russ B AltmanDepartment of Bioengineering, Stanford University, Stanford, CA, USA. Russ.Altman@stanford.edu.
Stanford University · USScripps Research Institute · USUniversity of Illinois Urbana-Champaign · US

Funding

Pilot Study: POPULATION PHARMACOLOGYU54HL117798 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI GROSSER, TILO · 2012 to 2016
$18.5M
Text Mining for High-fidelity Curation and Discovery of Gene-drug-phenotype RelationshipsR01LM005652 · NLM · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2000 to 2018
$6.2M
Structure and mechanism of the centrosome-cilium complexR35GM130286 · NIGMS · STANFORD UNIVERSITY · PI STEARNS, TIM · 2019 to 2023
$3.4M
Undergraduate Summer Research Experiences Support for Combining systems biology and structural biology to find new therapeuticsR01GM102365 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2012 to 2021
$3.0M
Chemical, structural and molecular rules for fully antagonizing the estrogen receptorR01CA220284 · NCI · UNIVERSITY OF FLORIDA · PI KATZENELLENBOGEN, BENITA S, KATZENELLENBOGEN, JOHN A. · 2018 to 2022
$2.8M
Functoinal compartmentalization of hedgehog signal transduction in primary ciliaR01GM121424 · NIGMS · STANFORD UNIVERSITY · PI STEARNS, TIM · 2017 to 2018
$615k
Transmission Electron MicroscopeS10RR026780 · NCRR · STANFORD UNIVERSITY · PI TALBOT, WILLIAM S · 2010 to 2010
$412k
NCI NIH HHS R01 CA220284NCRR NIH HHS S10 RR026780NHLBI NIH HHS U54 HL117798NIGMS NIH HHS R01 GM102365NIGMS NIH HHS R01 GM121424NIGMS NIH HHS R35 GM130286NLM NIH HHS R01 LM005652
6 · The paper itself

Abstract

Taxanes are a family of natural products with a broad spectrum of anticancer activity. This activity is mediated by interaction with the taxane site of beta-tubulin, leading to microtubule stabilization and cell death. Although widely used in the treatment of breast cancer and other malignancies, existing taxane-based therapies including paclitaxel and the second-generation docetaxel are currently limited by severe adverse effects and dose-limiting toxicity. To discover taxane site modulators, we employ a computational binding site similarity screen of > 14,000 drug-like pockets from PDB, revealing an unexpected similarity between the estrogen receptor and the beta-tubulin taxane binding pocket. Evaluation of nine selective estrogen receptor modulators (SERMs) via cellular and biochemical assays confirms taxane site interaction, microtubule stabilization, and cell proliferation inhibition. Our study demonstrates that SERMs can modulate microtubule assembly and raises the possibility of an estrogen receptor-independent mechanism for inhibiting cell proliferation.

Indexed as

Antineoplastic AgentsBinding SitesBridged-Ring CompoundsCell DeathCell Line, TumorCell ProliferationHumansLigandsMicrotubule ProteinsModels, MolecularPaclitaxelSelective Estrogen Receptor ModulatorsTaxoidsTubulinTubulin ModulatorsTumor MicroenvironmentAntineoplastic AgentsBridged-Ring CompoundsLigandsMicrotubule ProteinsPaclitaxelSelective Estrogen Receptor ModulatorstaxaneTaxoidsTubulinTubulin Modulators

Identifiers

PMID30833575
PMCPMC6399299
OpenAlexW2920332650

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.