Evidence map›Paper›PMID 30833557›Full record

ArticleNature communications2019

Helical antimicrobial peptides assemble into protofibril scaffolds that present ordered dsDNA to TLR9.

Ernest Y Lee, Changsheng Zhang, Jeremy Di Domizio, Fan Jin, Will Connell, Mandy Hung, Nicolas Malkoff, Veronica Veksler, Michel Gilliet, Pengyu Ren and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 82 citations in OpenAlex.

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  9. The strategies and advances of mRNA translation booster.Asian journal of pharmaceutical sciences · 2025
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  19. Amyloid-containing biofilms and autoimmunity.Current opinion in structural biology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Ernest Y LeeDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-5144-2552
Changsheng ZhangDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX, 78712, USA.
Jeremy Di DomizioDepartment of Dermatology, Lausanne University Hospital CHUV, 1011, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-6281-3918
Fan JinHefei National Laboratory for Physical Sciences at the Microscale, Department of Polymer Science and Engineering, CAS Key Laboratory of Soft Matter Chemistry, University of Science and Technology of China, Hefei, 230026, PR China.ORCID http://orcid.org/0000-0003-2313-0388
Will ConnellDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Mandy HungDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Nicolas MalkoffDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Veronica VekslerDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Michel GillietDepartment of Dermatology, Lausanne University Hospital CHUV, 1011, Lausanne, Switzerland.
Pengyu RenDepartment of Biomedical Engineering, The University of Texas at Austin, Austin, TX, 78712, USA. pren@mail.utexas.edu.ORCID http://orcid.org/0000-0002-5613-1910
Gerard C L WongDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA. gclwong@seas.ucla.edu.
University of California, Los Angeles · USUniversity of Lausanne · CHPeking University · CNThe University of Texas at Austin · USUniversity of Science and Technology of China · CN

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
Systems in Integrative BiologyT32GM008185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHOU, TOM · 1987 to 2022
$4.6M
DEVELOPMENT OF A NEXT-GENERATION NUCLEIC ACID FORCE FIELDR01GM106137 · NIGMS · WASHINGTON UNIVERSITY · PI JAY PONDER, Pengyu Ren · 2013 to 2026
$3.5M
Specificity and Selectivity in Protein-Ion BindingR01GM114237 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI PONDER, JAY, REN, PENGYU · 2015 to 2023
$2.6M
Dermatology Scientist Training ProgramT32AR071307 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MODLIN, ROBERT L · 2017 to 2021
$1.1M
Bacterial amyloids: interactions with DNA and pathogenicityR56AI125429 · NIAID · TEMPLE UNIV OF THE COMMONWEALTH · PI TUKEL, CAGLA · 2017 to 2017
$557k
NIAID NIH HHS R56 AI125429NIAMS NIH HHS T32 AR071307NIGMS NIH HHS R01 GM106137NIGMS NIH HHS R01 GM114237NIGMS NIH HHS T32 GM008042NIGMS NIH HHS T32 GM008185
6 · The paper itself

Abstract

Amphiphilicity in ɑ-helical antimicrobial peptides (AMPs) is recognized as a signature of potential membrane activity. Some AMPs are also strongly immunomodulatory: LL37-DNA complexes potently amplify Toll-like receptor 9 (TLR9) activation in immune cells and exacerbate autoimmune diseases. The rules governing this proinflammatory activity of AMPs are unknown. Here we examine the supramolecular structures formed between DNA and three prototypical AMPs using small angle X-ray scattering and molecular modeling. We correlate these structures to their ability to activate TLR9 and show that a key criterion is the AMP's ability to assemble into superhelical protofibril scaffolds. These structures enforce spatially-periodic DNA organization in nanocrystalline immunocomplexes that trigger strong recognition by TLR9, which is conventionally known to bind single DNA ligands. We demonstrate that we can "knock in" this ability for TLR9 amplification in membrane-active AMP mutants, which suggests the existence of tradeoffs between membrane permeating activity and immunomodulatory activity in AMP sequences.

Indexed as

Anti-Infective AgentsAntimicrobial Cationic PeptidesCathelicidinsCell DeathCell MembraneComputer SimulationDNAHumansImmunologic FactorsLigandsMacrophagesModels, MolecularProtein Conformation, alpha-HelicalScattering, RadiationToll-Like Receptor 9X-Ray DiffractionAnti-Infective AgentsAntimicrobial Cationic PeptidesCathelicidinsDNAImmunologic FactorsLigandsTLR9 protein, humanToll-Like Receptor 9

Identifiers

PMID30833557
PMCPMC6399285
OpenAlexW2918255589

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.