Evidence map›Paper›PMID 30833271›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2019

The Immune Subtypes and Landscape of Squamous Cell Carcinoma.

Bailiang Li, Yi Cui, Dhanya K Nambiar, John B Sunwoo, Ruijiang Li

Open access · greenAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 1 pooled it
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 1 synthesis or guideline pooled it, 194 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. [Mechanism ofSichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2025
    Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Bailiang Li *Department of Radiation Oncology, Stanford University School of Medicine, Palo Alto, California.ORCID 0000-0001-6729-219X
Yi Cui *Department of Radiation Oncology, Stanford University School of Medicine, Palo Alto, California.
Dhanya K NambiarDepartment of Radiation Oncology, Stanford University School of Medicine, Palo Alto, California.
John B SunwooDepartment of Otolaryngology-Head and Neck Surgery, Stanford University, Palo Alto, California.
Ruijiang LiDepartment of Radiation Oncology, Stanford University School of Medicine, Palo Alto, California. rli2@stanford.edu.ORCID 0000-0001-6729-219X
Palo Alto University · US

Funding

Multiregional imaging phenotypes and molecular correlates of aggressive versus indolent breast cancerR01CA222512 · NCI · STANFORD UNIVERSITY · PI LI, RUIJIANG · 2018 to 2023
$2.4M
NCI NIH HHS R01 CA222512
6 · The paper itself

Abstract

purposeTo identify immune subtypes and investigate the immune landscape of squamous cell carcinomas (SCC), which share common etiology and histologic features. EXPERIMENTAL

designBased on the immune gene expression profiles of 1,368 patients with SCC in the Cancer Genome Atlas (TCGA), we used consensus clustering to identify robust clusters of patients and assessed their reproducibility in an independent pan-SCC cohort of 938 patients. We further applied graph structure learning-based dimensionality reduction to the immune profiles to visualize the distribution of individual patients.

resultsWe identified and independently validated six reproducible immune subtypes associated with distinct molecular characteristics and clinical outcomes. An immune-cold subtype had the least amount of lymphocyte infiltration and a high level of aneuploidy, and these patients had the worst prognosis. By contrast, an immune-hot subtype demonstrated the highest infiltration of CD8

conclusionsThis study provides a conceptual framework to understand the tumor immune microenvironment of SCCs. Future work is needed to evaluate its relevance in the design of combination treatment strategies and guiding optimal selection of patients for immunotherapy.

Indexed as

Biomarkers, TumorCarcinoma, Squamous CellCD8-Positive T-LymphocytesCohort StudiesFemaleHumansMaleNeoplasmsPrognosisSurvival RateTranscriptomeTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID30833271
PMCPMC6571041
OpenAlexW2919959993

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.