Evidence map›Paper›PMID 30832715›Full record

ArticleClinical epigenetics2019

A comparison of DNA methylation in newborn blood samples from infants with and without orofacial clefts.

Zongli Xu, Rolv T Lie, Allen J Wilcox, Ola Didrik Saugstad, Jack A Taylor

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Genetic-epigenetic interactions (meQTLs) in orofacial clefts etiology.medRxiv : the preprint server for health sciences · 2025
    Article
  8. Disruption of DNA methylation-mediated cranial neural crest proliferation and differentiation causes orofacial clefts in mice.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. The impact of developmental genes in non-syndromic cleft lip and/or palateJournal of the Turkish German Gynecological Association · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Alterations in DNA Methylation in Orofacial Clefts.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Zongli XuEpidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA.ORCID 0000-0002-9034-8902
Rolv T LieDepartment of Global Public Health and Primary Care, University of Bergen, Bergen, Norway.
Allen J WilcoxEpidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA.
Ola Didrik SaugstadDepartment of Pediatric Research, Oslo University Hospital, Oslo, Norway.
Jack A TaylorEpidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA. taylor@niehs.nih.gov.
National Institute of Environmental Health Sciences · USNorwegian Institute of Public Health · NOOslo University Hospital · NO

Funding

Environmental Exposure and DNA DamageZIAES049032 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TAYLOR, JACK A · 2009 to 2022
$13.4M
Genetic Susceptibility And The Environment In Cancer RiskZIAES049033 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TAYLOR, JACK A · 2009 to 2022
$7.7M
GENETIC SUSCEPTIBILITY AND THE ENVIRONMENT IN CANCER RISKZ01ES049033 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TAYLOR, JACK A · 1997 to 2008
$1.4M
EXPOSURE SPECIFIC MUTATION IN CRITICAL TARGET GENESZ01ES049032 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TAYLOR, JACK A · 1997 to 2008
$1.0M
Intramural NIH HHS Z01 ES049032Intramural NIH HHS Z01 ES049033
6 · The paper itself

Abstract

backgroundIsolated orofacial clefts are among the most common congenital birth defects. Although the underlying biological mechanisms remain largely unknown, clefts are thought to be complex disorders influenced by genetic, environmental, and potentially epigenetic factors.

methodsIn blood samples from 2- to 3-day-old infants (n = 747) collected in a nationwide population-based study of orofacial clefts in Norway, we measured DNA methylation profiles for more than 450,000 CpGs and then conducted epigenome-wide association analyses (EWAS). We tested methylation profile difference at each CpG between controls (n = 436) and each of the cleft subtypes (92 cleft lip only, CLO; 84 cleft palate only, CPO; 132 cleft lip and palate, CLP). We also compared controls to various combinations of case groups and compared case subtypes to each other. Finally, using the EWAS results, we searched for larger differentially methylated regions (DMRs) associated with orofacial clefts.

resultsIn EWAS comparing controls to individual cleft subtypes, we found no significant associations at a Bonferroni P value threshold of 10

conclusionsWe identified two individual CpGs and multiple DMRs that differ between controls and cleft case subtypes. Although we find some evidence for the possible role of DNA methylation in etiology of orofacial clefts, our study does not support previous reports of widespread differences in blood DNA methylation between babies with and without facial clefts.

Indexed as

DNA MethylationCase-Control StudiesCleft LipCleft PalateCpG IslandsEpigenesis, GeneticFemaleGenome-Wide Association StudyHumansInfant, NewbornMaleNorwayRNA-Binding ProteinsSerine-Arginine Splicing FactorsBicc1 protein, humanCLASRP protein, humanRNA-Binding ProteinsSerine-Arginine Splicing FactorsBloodCleft lipCleft palateDNA methylationNewborns

Identifiers

PMID30832715
PMCPMC6399917
OpenAlexW2943331097

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.