Evidence map›Paper›PMID 30832566›Full record

ArticleBMC plant biology2019

Comparative transcriptome analysis reveals significant differences in the regulation of gene expression between hydrogen cyanide- and ethylene-treated Arabidopsis thaliana.

Lulu Yu, Yang Liu, Fei Xu

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  10. Season Affects Yield and Metabolic Profiles of Rice (International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Lulu YuApplied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China.
Yang LiuCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Fei XuApplied Biotechnology Center, Wuhan University of Bioengineering, Wuhan, 430415, China. feixu666@hotmail.com.ORCID http://orcid.org/0000-0003-3741-3928
Wuhan University · CNHuazhong Agricultural University · CN

Funding

National Natural Science Foundation of China 31400242
6 · The paper itself

Abstract

backgroundHydrogen cyanide (HCN) is a small gaseous molecule that is predominantly produced as an equimolar co-product of ethylene (ET) biosynthesis in plants. The function of ET is of great concern and is well studied; however, the function of HCN is largely unknown. Similar to ET, HCN is a simple and diffusible molecule that has been shown to play a regulatory role in the control of some metabolic processes in plants. Nevertheless, it is still controversial whether HCN should be regarded as a signalling molecule, and the cross-talk between HCN and ET in gene expression regulation remains unclear. In this study, RNA sequencing (RNA-seq) was performed to compare the differentially expressed genes (DEGs) between HCN and ET in Arabidopsis. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were subsequently performed to investigate the function and pathway enrichment of DEGs. Parts of key genes were confirmed by quantitative real-time PCR.

resultsThe results showed that at least 1305 genes and 918 genes were significantly induced by HCN and ET, respectively. Interestingly, a total of 474 genes (|log

conclusionOur findings provide a valuable resource for further exploration and understanding of the molecular regulatory mechanisms of HCN in plants and provide novel insight into HCN cross-talk with ET and other hormones in the regulation of plant growth and plant responses to environmental stresses.

Indexed as

ArabidopsisArabidopsis ProteinsEthylenesGene Expression Regulation, PlantHydrogen CyanideMitochondriaPlant Growth RegulatorsSequence Analysis, RNASignal TransductionStress, PhysiologicalArabidopsis ProteinsethyleneEthylenesHydrogen CyanidePlant Growth RegulatorsArabidopsis thalianaEthyleneHydrogen cyanideRNA-seq

Identifiers

PMID30832566
PMCPMC6399987
OpenAlexW2931992515

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.