Evidence map›Paper›PMID 30830912›Full record

ArticlePloS one2019

Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.

Isaac Darko Otchere, Andries J van Tonder, Adwoa Asante-Poku, Leonor Sánchez-Busó, Mireia Coscollá, Stephen Osei-Wusu, Prince Asare, Samuel Yaw Aboagye, Samuel Acquah Ekuban, Abdallah Iddrisu Yahayah and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

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  12. Improved detection ofJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
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  17. Multispacer Sequence Typing forFrontiers in veterinary science · 2021
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  18. Veterinary world · 2020
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  20. Microorganisms · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Isaac Darko OtchereNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.ORCID 0000-0001-8982-9488
Andries J van TonderWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.ORCID 0000-0002-4380-5250
Adwoa Asante-PokuNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.
Leonor Sánchez-BusóWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Mireia CoscolláInstitute for Integrative Systems Biology (I2SysBio), University of Valencia-CSIC, Valencia, Spain.
Stephen Osei-WusuNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.
Prince AsareNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.
Samuel Yaw AboagyeNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.
Samuel Acquah EkubanChest Department, Tamale Teaching Hospital, Tamale, Ghana.
Abdallah Iddrisu YahayahChest Department, Tamale Teaching Hospital, Tamale, Ghana.
Audrey ForsonDepartment of Chest Diseases, Korle-Bu Teaching Hospital, Accra, Ghana.
Akosua BaddooDepartment of Chest Diseases, Korle-Bu Teaching Hospital, Accra, Ghana.
Clement LaryeaPublic Health Department, 37 Military Hospital, Accra, Ghana.
Julian ParkhillWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Simon R HarrisWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Sebastien GagneuxSwiss Tropical and Public Health Institute, Basel, Switzerland.
Dorothy Yeboah-ManuNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Accra, Ghana.
University of Ghana · GHWellcome Sanger Institute · GBKorle Bu Teaching Hospital · GHTamale Teaching Hospital · GH37 Military Hospital · GHSwiss Tropical and Public Health Institute · CHUniversitat de València · ES

Funding

Wellcome TrustWellcome Trust 097134/Z/11/Z
6 · The paper itself

Abstract

backgroundBovine tuberculosis (bTB) caused by Mycobacterium bovis is a re-emerging problem in both livestock and humans. The association of some M. bovis strains with hyper-virulence, MDR-TB and disseminated disease makes it imperative to understand the biology of the pathogen.

methodsMycobacterium bovis (15) among 1755 M. tuberculosis complex (MTBC) isolated between 2012 and 2014 were characterized and analyzed for associated patient demography and other risk factors. Five of the M. bovis isolates were whole-genome sequenced and comparatively analyzed against a global collection of published M. bovis genomes.

resultsMycobacterium bovis was isolated from 3/560(0.5%) females and 12/1195(1.0%) males with pulmonary TB. The average age of M. bovis infected cases was 46.8 years (7-72years). TB patients from the Northern region of Ghana (1.9%;4/212) had a higher rate of infection with M. bovis (OR = 2.7,p = 0.0968) compared to those from the Greater Accra region (0.7%;11/1543). Among TB patients with available HIV status, the odds of isolating M. bovis from HIV patients (2/119) was 3.3 higher relative to non-HIV patients (4/774). Direct contact with livestock or their unpasteurized products was significantly associated with bTB (p<0.0001, OR = 124.4,95% CI = 30.1-508.3). Two (13.3%) of the M. bovis isolates were INH resistant due to the S315T mutation in katG whereas one (6.7%) was RIF resistant with Q432P and I1491S mutations in rpoB. M. bovis from Ghana resolved as mono-phyletic branch among mostly M. bovis from Africa irrespective of the host and were closest to the root of the global M. bovis phylogeny. M. bovis-specific amino acid mutations were detected among MTBC core genes such as mce1A, mmpL1, pks6, phoT, pstB, glgP and Rv2955c. Additional mutations P6T in chaA, G187E in mgtC, T35A in Rv1979c, S387A in narK1, L400F in fas and A563T in eccA1 were restricted to the 5 clinical M. bovis from Ghana.

conclusionOur data indicate potential zoonotic transmission of bTB in Ghana and hence calls for intensified public education on bTB, especially among risk groups.

Indexed as

AdolescentAdultAgedAnimalsCattleChildComorbidityDNA, BacterialDrug Resistance, BacterialFemaleGhanaHIV InfectionsHumansMaleMiddle AgedMolecular EpidemiologyDNA, Bacterial

Identifiers

PMID30830912
PMCPMC6398925
OpenAlexW2950624800

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.