Evidence map›Paper›PMID 30830696›Full record

ArticleAlcoholism, clinical and experimental research2019

Brain Imaging-Guided Analysis Reveals DNA Methylation Profiles Correlated with Insular Surface Area and Alcohol Use Disorder.

Yihong Zhao, Yongchao Ge, Zhi-Liang Zheng

Abstract read
In one paragraph

Article in Alcoholism, clinical and experimental research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Yihong ZhaoDepartment of Child and Adolescent Psychiatry, NYU Langone Medical Center, New York, New York.ORCID 0000-0001-8730-0476
Yongchao GeDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York.
Zhi-Liang ZhengDepartment of Biological Sciences, Lehman College, City University of New York, Bronx, New York.
Boston University · USIcahn School of Medicine at Mount Sinai · USLehman College · US

Funding

TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Daniel K Sodickson · 2014 to 2026
$19.3M
Links among DNA methylation, neurophenotypes, and alcohol use disorders (AUDs)R21AA023800 · NIAAA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZHAO, YIHONG · 2014 to 2014
$254k
Leon Levy FoundationNIAAA NIH HHS R21 AA023800NIBIB NIH HHS P41 EB017183
6 · The paper itself

Abstract

backgroundAlcohol use disorder (AUD) is a wide-spread, heritable brain disease, but few studies have linked genetic variants or epigenetic factors to brain structures related to AUD in humans, due to many factors including the high-dimensional nature of imaging and genomic data.

methodsTo provide potential insights into the links among epigenetic regulation, brain structure, and AUD, we have performed an integrative analysis of brain structural imaging and blood DNA methylome data from 52 AUD and 58 healthy control (HC) subjects collected in the Nathan Kline Institute-Rockland Sample.

resultsWe first found that AUD subjects had significantly larger insular surface area than HC in both left and right hemispheres. We then found that 7,827 DNA methylation probes on the HumanMethylation450K BeadChip had significant correlations with the right insular surface area (false discovery rate [FDR] < 0.05). Furthermore, we showed that 44 of the insular surface area-correlated methylation probes were also strongly correlated with AUD status (FDR < 0.05). These AUD-correlated probes are annotated to 36 protein-coding genes, with 16 genes (44%) having been reported by others to be related to AUD or alcohol response, including TAS2R16 and PER2. The remaining 20 genes, in particular ARHGAP22, might represent novel genes involved in AUD or responsive to alcohol.

conclusionsWe have identified 36 insular surface area- and AUD-correlated protein-coding genes that are either known to be AUD- or alcohol-related or not yet reported by prior studies. Therefore, our study suggests that the brain imaging-guided epigenetic analysis has a potential of identifying possible epigenetic mechanisms involved in AUD.

Indexed as

AdultAlcohol-Related DisordersCase-Control StudiesCerebral CortexComputational BiologyDNA MethylationEpigenomeFemaleHumansMagnetic Resonance ImagingMaleMiddle AgedNeuroimagingProtein Interaction MapsAlcohol ResponseAlcohol Use DisorderDNA MethylationInsular CortexSurface Area

Identifiers

PMID30830696
PMCPMC6443499
OpenAlexW2920315246

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.