Evidence map›Paper›PMID 30830469›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2018

Nitrogen deprivation in Fusarium oxysporum promotes mycotoxin production via intermediates in the Krebs cycle and unreported methylmalonyl-CoA mutase activity.

A V Karpe, M S Dunn, M C Taylor, T Nguyen, C Ong, T Karla, S Rockman, D J Beale

Abstract read
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In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

A V KarpeLand & Water, CSIRO, Ecosciences Precinct, Dutton Park, QLD, 4102, Australia.
M S DunnTechnical Development, Seqirus, 63 Poplar Road, Parkville, VIC, 3052, Australia.
M C TaylorLand & Water, CSIRO, Acton, ACT, 2601, Australia.
T NguyenTechnical Development, Seqirus, 63 Poplar Road, Parkville, VIC, 3052, Australia.
C OngTechnical Development, Seqirus, 63 Poplar Road, Parkville, VIC, 3052, Australia.
T KarlaTechnical Development, Seqirus, 63 Poplar Road, Parkville, VIC, 3052, Australia.
S RockmanTechnical Development, Seqirus, 63 Poplar Road, Parkville, VIC, 3052, Australia.
D J BealeLand & Water, CSIRO, Ecosciences Precinct, Dutton Park, QLD, 4102, Australia. david.beale@csiro.au.ORCID 0000-0002-9948-9197
CSIRO Land and Water · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionFusarium oxysporum has a high affinity for lignin and cellulose-based substrates and is known to grow in a wide range of environments. It is these properties and its ability to produce mycotoxins that have contributed to its pathogenicity in cereal crops that can affect human and animal health when ingested.

objectivesIdentify the mechanisms of mycotoxin production and map the functional output of F. oxysporum under varying growth conditions.

methodsLiquid and gas-based chromatography coupled with mass spectrometry was used to identify and map the untargeted metabolic pathway of F. oxysporum grown using nitrogen limited and organic/inorganic nitrogen supplemented media.

resultsOver 1300 metabolites were identified, relating to 42 metabolic pathways. Of these, 520 metabolites merged at pyruvate (glycolysis), succinate (Krebs cycle) and aspartate-glutamate metabolic pathways. CoA depletion at the growth stage triggered the initiation of fatty acid and branched amino acid degradation. This in turn activated propionyl CoA carnitine acetyltransferase enzymes, resulting in nitrogen preservation (urea, putrescine and organic acids end-products). CoA then transferred into the TCA cycle via previously unreported β-alanine and propionyl CoA metabolic pathways, the latter likely being a novel methylmalonyl-CoA mutase activity for F. oxysporum.

conclusionsThe lower supplementation of inorganic nitrogen compounds (≤ 50 mM) and the elimination of nitrates/organic nitrogen sources resulted in TCA autophagy events that boosted mycotoxin-based metabolism and decreased overall F. oxysporum growth. Such knowledge of functional mycotoxin production can be used to supplement agricultural crops and reduce the risk of mycotoxin contamination in human and animal food supplies.

Indexed as

Citric Acid CycleMetabolomeFusariumGas Chromatography-Mass SpectrometryMetabolic Networks and PathwaysMethylmalonyl-CoA MutaseMycotoxinsNitrogenMethylmalonyl-CoA MutaseMycotoxinsNitrogenAspartateCoA stressFusarium mycotoxinsGC-MSLC-MSMetabolomicsNitrogen rescue

Identifiers

PMID30830469
OpenAlexW2903828340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.