Evidence map›Paper›PMID 30828823›Full record

ArticleTransfusion2019

The nonconservative CD177 single-nucleotide polymorphism c.1291G>A is a genetic determinant for human neutrophil antigen-2 atypical/low expression and deficiency.

Jianming Wu, Yunfang Li, Randy M Schuller, Ling Li, Anne-Sophie Litmeyer, Gregor Bein, Ulrich J Sachs, Behnaz Bayat

Open access · greenAbstract read
In one paragraph

Article in Transfusion, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. TheInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Multicenter Study on Differential Human Neutrophil Antigen 2 Expression and Underlying Molecular Mechanisms.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jianming WuDepartment of Veterinary and Biomedical Sciences, University of Minnesota, St Paul, Minnesota.
Yunfang LiDepartment of Veterinary and Biomedical Sciences, University of Minnesota, St Paul, Minnesota.
Randy M SchullerNorth Central Blood Services, National Neutrophil Reference Laboratory, American Red Cross, St Paul, Minnesota.
Ling LiDepartment of Clinical and Experimental Pharmacology, University of Minnesota Twin Cities, Minneapolis, Minnesota.
Anne-Sophie LitmeyerInstitute for Clinical Immunology and Transfusion Medicine, Justus Liebig University, Giessen, Germany.
Gregor BeinInstitute for Clinical Immunology and Transfusion Medicine, Justus Liebig University, Giessen, Germany.
Ulrich J SachsInstitute for Clinical Immunology and Transfusion Medicine, Justus Liebig University, Giessen, Germany.
Behnaz BayatInstitute for Clinical Immunology and Transfusion Medicine, Justus Liebig University, Giessen, Germany.
University of Giessen · DEUniversity of Minnesota · USAmerican Red Cross · US

Funding

Functions of CD177 as a novel IgG Fc receptorR21AI149395 · NIAID · UNIVERSITY OF MINNESOTA · PI WU, JIANMING · 2020 to 2021
$424k
High affinity IgG Fc receptor FcγRIA variants as novel genetic markers for sarcoidosisR21AI125729 · NIAID · UNIVERSITY OF MINNESOTA · PI WU, JIANMING · 2016 to 2017
$419k
NIAID NIH HHS R21 AI125729NIAID NIH HHS R21 AI149395NIH HHS R21AI125729
6 · The paper itself

Abstract

backgroundHuman neutrophil antigen-2 (HNA-2) is exclusively expressed on neutrophils. HNA-2-deficient individuals (HNA-2 null) are susceptible to produce isoantibodies. The nonsense CD177 coding single-nucleotide polymorphism (SNP) c.787A>T has been demonstrated as the primary genetic mechanism for HNA-2 deficiency. We hypothesized that the other genetic variants also contribute to HNA-2 expression variation and deficiency. STUDY DESIGN AND

methodsThe deficiency, density, and percentage of HNA-2 antigen on neutrophils from 292 healthy blood donors were determined in flow cytometry. CD177 genotypes were determined by genomic DNA sequence analyses. The full-length CD177 cDNAs were amplified and sequenced. Additionally, the whole CD177 genomic sequence in eight HNA-2-null immunized women and four HNA-2-positive donors were analyzed with next-generation sequencing. The associations of CD177 SNP genotypes with HNA-2 expression variation were statistically analyzed.

resultsA functional CD177 SNP c.1291G>A was identified in the current study. Atypical (trimodal) HNA-2 expression phenotype was consistently observed in donors carrying the heterozygous c.1291G/A genotype. Phenotype-genotype analyses of SNP c.787A>T and SNP c.1291G>A revealed that all homozygous 787T-1291G (TG/TG) genotype donors were HNA-2 null in healthy blood donors. On the other hand, five of eight HNA-2-immunized females were homozygous for the 787T-1291G (TG/TG) genotype while the other three HNA-2-immunized females had the 787T-1291G/787A-1291A (TG/AA) genotype and the lowest HNA-2 expression was observed in healthy subjects with the 787T-1291G/787A-1291A (TG/AA) and 787A-1291A/787A-1291A (AA/AA) genotype.

conclusionThe CD177 SNP c.1291G>A is a genetic determinant for the atypical and low HNA-2 expression, which also contributes to HNA-2 deficiency phenotype.

Indexed as

Base SequenceDNA, ComplementaryFemaleFlow CytometryGenotypeGPI-Linked ProteinsHumansIsoantigensNeutrophilsPolymorphism, Single NucleotideReceptors, Cell SurfaceCD177 protein, humanDNA, ComplementaryGPI-Linked ProteinsIsoantigensReceptors, Cell Surface

Identifiers

PMID30828823
PMCPMC6499709
OpenAlexW2918822665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.