Evidence map›Paper›PMID 30828412›Full record

ArticleComputational and structural biotechnology journal2019

Protein structure aids predicting functional perturbation of missense variants in

Brett M Kroncke, Jeffrey Mendenhall, Derek K Smith, Charles R Sanders, John A Capra, Alfred L George, Jeffrey D Blume, Jens Meiler, Dan M Roden

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Structural Evaluation ofCirculation. Genomic and precision medicine · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Continuous Bayesian variant interpretation accounts for incomplete penetrance among Mendelian cardiac channelopathies.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  6. Article
  7. Estimating the Posttest Probability of Long QT Syndrome Diagnosis for RareCirculation. Genomic and precision medicine · 2021
    Article
  8. High-Throughput Reclassification of SCN5A Variants.American journal of human genetics · 2020
    Article
  9. Article
  10. Deep Mutational Scan of anCirculation. Genomic and precision medicine · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brett M KronckeDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Jeffrey MendenhallDepartment of Chemistry, Vanderbilt University, Nashville, TN 37232, USA.
Derek K SmithDepartment of Biostatistics, Vanderbilt University, Nashville, TN 37240, USA.
Charles R SandersCenter for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA.
John A CapraDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Alfred L GeorgeDepartment of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Jeffrey D BlumeDepartment of Biostatistics, Vanderbilt University, Nashville, TN 37240, USA.
Jens MeilerDepartment of Chemistry, Vanderbilt University, Nashville, TN 37232, USA.
Dan M RodenDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.

Funding

Decrypting Variants of Uncertain Significance in Long-QT SyndromeR01HL122010 · NHLBI · VANDERBILT UNIVERSITY · PI GEORGE, ALFRED L., SANDERS, CHARLES R · 2014 to 2025
$15.5M
SCN5A (Nav1.5): Predicting the Consequence of Missense Single- Nucleotide Polymorphisms.R00HL135442 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KRONCKE, BRETT M · 2019 to 2021
$741k
NHLBI NIH HHS R00 HL135442NHLBI NIH HHS R01 HL122010
6 · The paper itself

Abstract

Rare variants in the cardiac potassium channel K

Indexed as

And protein functionFunction predictionKCNQ1Protein structureSCN5A

Identifiers

PMID30828412
PMCPMC6383132

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.