Evidence map›Paper›PMID 30828387›Full record

ArticleGut pathogens2019

Comparative genomic analysis of enterotoxigenic

Si-Yun Chung, Taesoo Kwon, Young-Seok Bak, Joung Je Park, Cheorl-Ho Kim, Seung-Hak Cho, Won Kim

Open access · goldAbstract readCase Reports
In one paragraph

Article in Gut pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Si-Yun Chung *1School of Biological Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 151-742 Republic of Korea.
Taesoo Kwon *Cloud9, 133, Yeonje-gil, Osong-eup, Heungdeok-gu, Cheongju-si, Chungcheongbuk-do 28164 Republic of Korea.
Young-Seok Bak3Department of Emergency Medical Services, Sun Moon University, Asan-si, Chungcheongnam-do 31460 Republic of Korea.
Joung Je Park4Department of Emergency Medical Service, Pohang University, Heunghae-eup, Sindeok-ro, Pohang-si, Gyeongsangbuk-do Republic of Korea.
Cheorl-Ho Kim5Glycobiology Unit, Department of Biological Science, Sungkyunkwan University and Samsung Advanced Institute for Health Sciences and Technology (SAIHST), 2066 Seobu-ro, Suwon, 16419 Republic of Korea.
Seung-Hak Cho *6Division of Bacterial Disease Research, Center for Infectious Disease Research, Korea National Institute of Health, Cheongju, 363-951 Republic of Korea.
Won Kim *1School of Biological Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 151-742 Republic of Korea.
Seoul National University · KRKorea National Institute of Health · KRPohang University of Science and Technology · KRSungkyunkwan University · KRSun Moon University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEnterotoxigenic

resultsWhole genome sequencing showed that genome size of NCCP15731 strain was 4,663,459 bp, containing 4435 CDS and 19 RNAs. The genome size of NCCP15733 was 4,645,336 bp, containing 4369 CDS and 23 RNAs. Both NCCP15731 and NCCP15733 were classified in the phylo-group A, which is one of major

conclusionsSerotype of NCCP15731 and NCCP15733, representing major types of ETEC in Korea, was O159:H34 and their MLST type was ST218. Comparison with other O159 strains revealed that NCCP15731 was specialized for transporter system and secretion system whereas NCCP15733 had unique genes related to capsular polysaccharide. Compared with E159, the most recent common ancestor, these two strains had different toxin type and virulence factors. These results will improve our understanding of ETEC O159 strains to prevent ETEC disease.

Indexed as

Colonization factorsEnterotoxigenic Escherichia coli O159Phylo-groupsVirulence factorsWhole genome sequencing

Identifiers

PMID30828387
PMCPMC6383257
OpenAlexW2927530559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.