Evidence map›Paper›PMID 30828253›Full record

ArticleBiodiversity data journal2019

Reference DNA barcodes and other mitochondrial markers for identifying Caribbean Octocorals.

Jaime G Morín, Dagoberto E Venera-Pontón, Amy C Driskell, Juan A Sánchez, Howard R Lasker, Rachel Collin

Open access · goldAbstract read
In one paragraph

Article in Biodiversity data journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 4 countries.

Jaime G MorínLaboratorio de Sistemática Molecular y Filogeografía, Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru Laboratorio de Sistemática Molecular y Filogeografía, Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos Lima Peru.
Dagoberto E Venera-PontónSmithsonian Tropical Research Institute, Panama City, Panama Smithsonian Tropical Research Institute Panama City Panama.
Amy C DriskellLaboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., United States of America Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution Washington, D.C. United States of America.
Juan A SánchezLaboratorio de Biología Molecular Marina - BIOMMAR, Bogotá, Colombia Laboratorio de Biología Molecular Marina - BIOMMAR Bogotá Colombia.
Howard R LaskerDepartment of Geology, University at Buffalo, Buffalo, United States of America Department of Geology, University at Buffalo Buffalo United States of America.
Rachel CollinSmithsonian Tropical Research Institute, Balboa, Panama Smithsonian Tropical Research Institute Balboa Panama.ORCID https://orcid.org/0000-0001-5103-4460
Smithsonian Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identification within some "basal" phyla of metazoans. Nevertheless metabarcoding studies of bulk mixed samples commonly use these markers and may obtain sequences for "basal" phyla. We sequenced mitochondrial DNA fragments of cytochrome oxidase c subunit I (COI), 16S ribosomal RNA (16S), NADH dehydrogenase subunits 2 (16S-ND2), 6 (ND6-ND3) and 4L (ND4L-MSH) for 27 species of Caribbean octocorals to create a reference barcode dataset and to compare the utility of COI and 16S to other markers more typically used for octocorals. The most common genera (

Indexed as

16SBocas del Torocytochrome oxidase IDNA barcodinggorgonianPanama

Identifiers

PMID30828253
PMCPMC6393399
OpenAlexW2916308668

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.