Evidence map›Paper›PMID 30825649›Full record

ArticleJournal of structural biology2019

Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose.

Garyfallia I Makrynitsa, Dioni Ntonti, Konstantinos D Marousis, Maria Birkou, Minos-Timotheos Matsoukas, Sam Asami, Detlef Bentrop, Nicolas Papageorgiou, Bruno Canard, Bruno Coutard and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of structural biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. NMR study of human macroPARPs domains:Biomolecular NMR assignments · 2026
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  5. Mutation of a highly conserved isoleucine residue in loop 2 of severalbioRxiv : the preprint server for biology · 2024
    Article
  6. SARS-CoV-2 Mac1 is required for IFN antagonism and efficient virus replication in cell culture and in mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  12. Review
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  15. ADP-ribose and analogues bound to the deMARylating macrodomain from the bat coronavirus HKU4.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Garyfallia I MakrynitsaDepartment of Pharmacy, University of Patras, GR-26504, Greece.
Dioni NtontiDepartment of Pharmacy, University of Patras, GR-26504, Greece.
Konstantinos D MarousisDepartment of Pharmacy, University of Patras, GR-26504, Greece.
Maria BirkouDepartment of Pharmacy, University of Patras, GR-26504, Greece.
Minos-Timotheos MatsoukasDepartment of Pharmacy, University of Patras, GR-26504, Greece.
Sam AsamiMunich Center for Integrated Protein Science (CIPS-M) at Department Chemie, Technische Universität München (TUM), Lichtenbergstr. 4, 85747 Garching, Germany.
Detlef BentropInstitute of Physiology II, Faculty of Medicine, University of Freiburg, D-79104 Freiburg, Germany.
Nicolas PapageorgiouAix Marseille Université, CNRS, AFMB UMR 7257, Marseille, France.
Bruno CanardAix Marseille Université, CNRS, AFMB UMR 7257, Marseille, France.
Bruno CoutardUVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection, Marseille, France. Electronic address: Bruno.coutard@univ-amu.fr.
Georgios A SpyrouliasDepartment of Pharmacy, University of Patras, GR-26504, Greece. Electronic address: G.A.Spyroulias@upatras.gr.
University of Patras · GRCentre National de la Recherche Scientifique · FRCenter for Integrated Protein Science Munich · DEInserm · FRUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Venezuelan equine encephalitis virus (VEEV) is a new world alphavirus which can be involved in several central nervous system disorders such as encephalitis and meningitis. The VEEV genome codes for 4 non-structural proteins (nsP), of which nsP3 contains a Macro domain. Macro domains (MD) can be found as stand-alone proteins or embedded within larger proteins in viruses, bacteria and eukaryotes. Their most common feature is the binding of ADP-ribose (ADPr), while several macro domains act as ribosylation writers, erasers or readers. Alphavirus MD erase ribosylation but their precise contribution in viral replication is still under investigation. NMR-driven titration experiments of ADPr in solution with the VEEV macro domain (in apo- and complex state) show that it adopts a suitable conformation for ADPr binding. Specific experiments indicate that the flexibility of the loops β5-α3 and α3-β6 is critical for formation of the complex and assists a wrapping mechanism for ADPr binding. Furthermore, along with this sequence of events, the VEEV MD undergoes a conformational exchange process between the apo state and a low-populated "dark" conformational state.

Indexed as

Molecular Dynamics SimulationProtein DomainsAdenosine Diphosphate RiboseAnimalsEncephalitis Virus, Venezuelan EquineHorsesHumansMagnetic Resonance SpectroscopyMolecular ConformationProtein BindingViral Nonstructural ProteinsVirus ReplicationAdenosine Diphosphate RiboseViral Nonstructural Proteins15N relaxationADP-riboseConformational dynamicsNMR spectroscopyNormal mode analysisViral macro domain

Identifiers

PMID30825649
PMCPMC7111667
OpenAlexW2917615153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.