Evidence map›Paper›PMID 30824696›Full record

ArticleNature communications2019

Systematic analysis reveals the prevalence and principles of bypassable gene essentiality.

Jun Li, Hai-Tao Wang, Wei-Tao Wang, Xiao-Ran Zhang, Fang Suo, Jing-Yi Ren, Ying Bi, Ying-Xi Xue, Wen Hu, Meng-Qiu Dong and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. The power of many: when genetics met yeasts and high-throughput.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A meiotic driver hijacks an epigenetic reader to disrupt mitosis in noncarrier offspring.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Essential genes: a cross-species perspective.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Analysis of the Plasmid-BasedApplied and environmental microbiology · 2022
    Article
  18. Mitotic spindle formation in the absence of Polo kinase.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jun LiNational Institute of Biological Sciences, 102206, Beijing, China.
Hai-Tao WangNational Institute of Biological Sciences, 102206, Beijing, China.
Wei-Tao WangNational Institute of Biological Sciences, 102206, Beijing, China.
Xiao-Ran ZhangNational Institute of Biological Sciences, 102206, Beijing, China.
Fang SuoNational Institute of Biological Sciences, 102206, Beijing, China.
Jing-Yi RenNational Institute of Biological Sciences, 102206, Beijing, China.
Ying BiNational Institute of Biological Sciences, 102206, Beijing, China.
Ying-Xi XueNational Institute of Biological Sciences, 102206, Beijing, China.
Wen HuNational Institute of Biological Sciences, 102206, Beijing, China.
Meng-Qiu DongNational Institute of Biological Sciences, 102206, Beijing, China.ORCID http://orcid.org/0000-0002-6094-1182
Li-Lin DuNational Institute of Biological Sciences, 102206, Beijing, China. dulilin@nibs.ac.cn.ORCID http://orcid.org/0000-0002-1028-7397

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene essentiality is a variable phenotypic trait, but to what extent and how essential genes can become dispensable for viability remain unclear. Here, we investigate 'bypass of essentiality (BOE)' - an underexplored type of digenic genetic interaction that renders essential genes dispensable. Through analyzing essential genes on one of the six chromosome arms of the fission yeast Schizosaccharomyces pombe, we find that, remarkably, as many as 27% of them can be converted to non-essential genes by BOE interactions. Using this dataset we identify three principles of essentiality bypass: bypassable essential genes tend to have lower importance, tend to exhibit differential essentiality between species, and tend to act with other bypassable genes. In addition, we delineate mechanisms underlying bypassable essentiality, including the previously unappreciated mechanism of dormant redundancy between paralogs. The new insights gained on bypassable essentiality deepen our understanding of genotype-phenotype relationships and will facilitate drug development related to essential genes.

Indexed as

Epistasis, GeneticGenes, EssentialChromosome MappingChromosomesDatabases, GeneticEvolution, MolecularGene Regulatory NetworksGenes, FungalGenotypeModels, GeneticPhenotypePlasmidsSchizosaccharomycesSpecies Specificity

Identifiers

PMID30824696
PMCPMC6397241

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.