Evidence map›Paper›PMID 30823580›Full record

ArticleMolecules (Basel, Switzerland)2019

Linear Response Functions of Densities and Spin Densities for Systematic Modeling of the QM/MM Approach for Mono- and Poly-Nuclear Transition Metal Systems.

Colin K Kitakawa, Tomohiro Maruyama, Jinta Oonari, Yuki Mitsuta, Takashi Kawakami, Mitsutaka Okumura, Kizashi Yamaguchi, Shusuke Yamanaka

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Colin K KitakawaGraduate School of Science, Osaka University, Osaka 565-0871, Japan. kitakawac15@chem.sci.osaka-u.ac.jp.ORCID 0000-0002-5004-0452
Tomohiro MaruyamaGraduate School of Science, Osaka University, Osaka 565-0871, Japan. maruyamat16@chem.sci.osaka-u.ac.jp.
Jinta OonariGraduate School of Science, Osaka University, Osaka 565-0871, Japan. oonarij16@chem.sci.osaka-u.ac.jp.
Yuki MitsutaGraduate School of Science, Osaka University, Osaka 565-0871, Japan. mitsutay13@chem.sci.osaka-u.ac.jp.
Takashi KawakamiGraduate School of Science, Osaka University, Osaka 565-0871, Japan. kawakami@chem.sci.osaka-u.ac.jp.
Mitsutaka OkumuraGraduate School of Science, Osaka University, Osaka 565-0871, Japan. ok@chem.sci.osaka-u.ac.jp.
Kizashi YamaguchiInstitute for Nanodesign, Osaka University, Osaka 560-8531, Japan. yama@chem.sci.osaka-u.ac.jp.
Shusuke YamanakaGraduate School of Science, Osaka University, Osaka 565-0871, Japan. syama@chem.sci.osaka-u.ac.jp.
The University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We applied our analysis, based on a linear response function of density and spin density, to two typical transition metal complex systems-the reaction centers of P450, and oxygen evolving center in Photosystem II, both of which contain open-shell transition metal ions. We discuss the relationship between LRF of electron density and spin density and the types of units and interactions of the systems. The computational results are discussed in relation to quantum mechanics (QM) cluster and quantum mechanics/molecular mechanics (QM/MM) modeling that are employed to compute the reaction centers of enzymes.

Indexed as

CatalysisCoordination ComplexesElectron TransportMolecular Dynamics SimulationMolecular StructureOxidation-ReductionOxygenPhotochemical ProcessesPhotosystem II Protein ComplexQuantum TheoryTransition ElementsWaterCoordination ComplexesOxygenPhotosystem II Protein ComplexTransition ElementsWaterenzymeslinear response functionQM/MMtransition metal complexes

Identifiers

PMID30823580
PMCPMC6412466
OpenAlexW2917482442

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.