Evidence map›Paper›PMID 30823577›Full record

ArticleMolecules (Basel, Switzerland)2019

A Density Functional Theory-Based Scheme to Compute the Redox Potential of a Transition Metal Complex: Applications to Heme Compound.

Toru Matsui, Jong-Won Song

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. The redox potential of a heme cofactor inPhysical chemistry chemical physics : PCCP · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Toru MatsuiDepartment of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577, Japan. matsui@chem.tsukuba.ac.jp.ORCID 0000-0001-9847-5925
Jong-Won SongDepartment of Chemistry Education, Daegu University, Gyeongsan-si 113-8656, Korea. sjoshua@daegu.ac.kr.ORCID 0000-0003-3387-3265

Funding

Grant-in-Aids for young scientists (B), from the Japanese Society for the Promotion of Science 26810012Scientific research (B) from the Japanese Society for the Promotion of Science 17H03034
6 · The paper itself

Abstract

We estimated the redox potential of a model heme compound by using the combination of our density functionals with a computational scheme, which corrects the solvation energy to the normal solvent model. Among many density functionals, the LC-BOP12 functional gave the smallest mean absolute error of 0.16 V in the test molecular sets. The application of these methods revealed that the redox potential of a model heme can be controlled within 200 mV by changing the protonation state and even within 20 mV by the flipping of the ligand histidine. In addition, the redox potential depends on the inverse of the dielectric constant, which controls the surroundings. The computational results also imply that a system with a low dielectric constant avoids the charged molecule by controlling either the redox potential or the protonation system.

Indexed as

Density Functional TheoryModels, MolecularCoordination ComplexesElectrochemical TechniquesHemeHistidineLigandsOxidation-ReductionProtein ConformationTransition ElementsCoordination ComplexesHemeHistidineLigandsTransition Elementsmetal complexrange-separated density functional theory (DFT)redox potential

Identifiers

PMID30823577
PMCPMC6412623

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.