Evidence map›Paper›PMID 30823456›Full record

ArticlePathogens (Basel, Switzerland)2019

The 3' Untranslated Region of a Plant Viral RNA Directs Efficient Cap-Independent Translation in Plant and Mammalian Systems.

Jelena J Kraft, Mariko S Peterson, Sung Ki Cho, Zhaohui Wang, Alice Hui, Aurélie M Rakotondrafara, Krzysztof Treder, Cathy L Miller, W Allen Miller

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Structure of saguaro cactus virus 3' translational enhancer mimics 5' cap for eIF4E binding.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
  10. Review
  11. Article
  12. mBio · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jelena J KraftDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA. jelenajk@iastate.edu.
Mariko S PetersonDepartment of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA. mariko.peterson@emory.edu.
Sung Ki ChoDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA. skcho011@gmail.com.
Zhaohui WangDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA. zhaohuiw@wustl.edu.
Alice HuiInterdepartmental Plant Biology Program, Iowa State University, Ames, IA 50011, USA. ahuh41@gmail.com.
Aurélie M RakotondrafaraDepartment of Plant Pathology, University of Wisconsin, Madison, WI 53706, USA. rakotondrafa@wisc.edu.
Krzysztof TrederLaboratory of Molecular Diagnostic and Biochemistry, Bonin Research Center, Plant Breeding and Acclimatization Institute⁻National Research Institute, 76-009 Bonin, Poland. k.treder@ihar.edu.pl.
Cathy L MillerDepartment of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA 50011, USA. clm@iastate.edu.
W Allen MillerDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA. wamiller@iastate.edu.ORCID 0000-0003-0603-2751
Iowa State University · USEmory Healthcare · USPlant Breeding and Acclimatization Institute - National Research Institute · PLUniversity of Wisconsin–Madison · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008169 · NIGMS · EMORY UNIVERSITY · PI GROSS, ROBERT E · 1987 to 2021
$20.3M
Control of cap-independent translation by a viral 3' UTRR01GM067104 · NIGMS · IOWA STATE UNIVERSITY · PI MILLER, WYATT ALLEN · 2003 to 2016
$3.0M
NIGMS NIH HHS 4 R01GM067104-12NIGMS NIH HHS R01 GM067104NIGMS NIH HHS T32 GM008169
6 · The paper itself

Abstract

Many plant viral RNA genomes lack a 5' cap, and instead are translated via a cap-independent translation element (CITE) in the 3' untranslated region (UTR). The panicum mosaic virus-like CITE (PTE), found in many plant viral RNAs, binds and requires the cap-binding translation initiation factor eIF4E to facilitate translation. eIF4E is structurally conserved between plants and animals, so we tested cap-independent translation efficiency of PTEs of nine plant viruses in plant and mammalian systems. The PTE from thin paspalum asymptomatic virus (TPAV) facilitated efficient cap-independent translation in wheat germ extract, rabbit reticulocyte lysate, HeLa cell lysate, and in oat and mammalian (BHK) cells. Human eIF4E bound the TPAV PTE but not a PTE that did not stimulate cap-independent translation in mammalian extracts or cells. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE) footprinting revealed that both human and wheat eIF4E protected the conserved guanosine (G)-rich domain in the TPAV PTE pseudoknot. The central G plays a key role, as it was found to be required for translation and protection from SHAPE modification by eIF4E. These results provide insight on how plant viruses gain access to the host's translational machinery, an essential step in infection, and raise the possibility that similar PTE-like mechanisms may exist in mRNAs of mammals or their viruses.

Indexed as

3′ untranslated region5′ capcap-independent translationplant viruspseudoknotRNA binding proteinTombusviridaetranslation initiation

Identifiers

PMID30823456
PMCPMC6471432
OpenAlexW2917011364

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.