Evidence map›Paper›PMID 30821513›Full record

ReviewCritical reviews in biochemistry and molecular biology2019

Resistance outside the substrate envelope: hepatitis C NS3/4A protease inhibitors.

Ayşegül Özen, Kristina Prachanronarong, Ashley N Matthew, Djade I Soumana, Celia A Schiffer

Open access · greenAbstract readReview
In one paragraph

Review in Critical reviews in biochemistry and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Hepatitis C: A Pharmacological Therapeutic Update.Journal of clinical medicine · 2021
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ayşegül Özena Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , Worcester , MA , USA.
Kristina Prachanronaronga Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , Worcester , MA , USA.
Ashley N Matthewa Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , Worcester , MA , USA.
Djade I Soumanaa Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , Worcester , MA , USA.
Celia A Schiffera Department of Biochemistry and Molecular Pharmacology , University of Massachusetts Medical School , Worcester , MA , USA.
University of Massachusetts Chan Medical School · US

Funding

Drug Resistance in HCV NS3/4A - Inhibitor binding versus substrate recognitionR01AI085051 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2010 to 2019
$4.6M
HCV protease: from atomic mechanism for drug resistance to novel drug designF31GM103259 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SOUMANA, DJADE IBRAHIM · 2013 to 2015
$86k
Structure-based design of robust cross-genotypic NS3/4A protease inhibitors that avoid resistanceF31GM119345 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MATTHEW, ASHLEY NICOLE · 2016 to 2017
$64k
NIAID NIH HHS R01 AI085051NIGMS NIH HHS F31 GM103259NIGMS NIH HHS F31 GM119345
6 · The paper itself

Abstract

Direct acting antivirals have dramatically increased the efficacy and tolerability of hepatitis C treatment, but drug resistance has emerged with some of these inhibitors, including nonstructural protein 3/4 A protease inhibitors (PIs). Although many co-crystal structures of PIs with the NS3/4A protease have been reported, a systematic review of these crystal structures in the context of the rapidly emerging drug resistance especially for early PIs has not been performed. To provide a framework for designing better inhibitors with higher barriers to resistance, we performed a quantitative structural analysis using co-crystal structures and models of HCV NS3/4A protease in complex with natural substrates and inhibitors. By comparing substrate structural motifs and active site interactions with inhibitor recognition, we observed that the selection of drug resistance mutations correlates with how inhibitors deviate from viral substrates in molecular recognition. Based on this observation, we conclude that guiding the design process with native substrate recognition features is likely to lead to more robust small molecule inhibitors with decreased susceptibility to resistance.

Indexed as

Drug Resistance, ViralAnimalsCatalytic DomainHepacivirusHepatitis CHumansProtease InhibitorsProtein ConformationSerine ProteasesViral Nonstructural ProteinsNS3-4A serine protease, Hepatitis C virusProtease InhibitorsSerine ProteasesViral Nonstructural ProteinsDrug resistancehepatitis CNS34/A proteaseprotease inhibitorsresistance mutationsstructure-based drug designsubstrate envelope

Identifiers

PMID30821513
PMCPMC7717897
OpenAlexW2920319972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.