Evidence map›Paper›PMID 30821055›Full record

ArticlePsychiatry and clinical neurosciences2019

Genome-wide DNA methylation investigation of glucocorticoid exposure within buccal samples.

Patricia R Braun, Mai Tanaka-Sahker, Aubrey C Chan, Sydney S Jellison, Mason J Klisares, Benjamin W Hing, Yaseen Shabbir, Lindsey N Gaul, Yasunori Nagahama, Julian Robles and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Psychiatry and clinical neurosciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. DNA methylation is associated with inhaled corticosteroid response in persistent childhood asthmatics.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 1 country.

Patricia R BraunDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.ORCID https://orcid.org/0000-0002-5634-4596
Mai Tanaka-SahkerDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Aubrey C ChanDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Sydney S JellisonDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Mason J KlisaresDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Benjamin W HingDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Yaseen ShabbirDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Lindsey N GaulDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Yasunori NagahamaDepartment of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
Julian RoblesDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Jonathan T HeinzmanDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Sayeh SabbaghDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Ellyn M CramerDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Gabrielle N DuncanDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Kumi YukiDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.
Liesl N CloseDepartment of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
Brian J DlouhyDepartment of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
Matthew A HowardDepartment of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
Hiroto KawasakiDepartment of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
Kyle M SteinDepartment of Oral and Maxillofacial Surgery, Carver College of Medicine, University of Iowa, Iowa City, USA.
James B PotashDepartment of Psychiatry and Behavioral Science, School of Medicine, Johns Hopkins University, Baltimore, USA.
Gen ShinozakiDepartment of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, USA.ORCID https://orcid.org/0000-0001-6129-2789
University of Iowa · USJohns Hopkins University · US

Funding

The Iowa Neuroscience Specialty Program in Research Education (INSPIRE)T32MH019113 · NIMH · UNIVERSITY OF IOWA · PI HANNA E STEVENS, John A Wemmie · 1991 to 2026
$5.6M
SHORT-TERM TRAINING: STUDENTS IN HEALTH PROF. SCHOOLST35HL007485 · NHLBI · UNIVERSITY OF IOWA · PI ROGHAIR, ROBERT D · 1985 to 2019
$4.3M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Epigenetic Investigation of Trauma in PTSD and DepressionK23MH107654 · NIMH · UNIVERSITY OF IOWA · PI SHINOZAKI, GEN · 2015 to 2018
$718k
NHLBI NIH HHS T35 HL007485NIGMS NIH HHS T32 GM008629NIH HHS K23MH107654NIH HHS T32GM008629NIMH NIH HHS K23 MH107654NIMH NIH HHS T32 MH019113
6 · The paper itself

Abstract

aimGlucocorticoids play a major role in regulating the stress response, and an imbalance of glucocorticoids has been implicated in stress-related disorders. Within mouse models, CpGs across the genome have been shown to be differentially methylated in response to glucocorticoid treatment, and using the Infinium 27K array, it was shown that humans given synthetic glucocorticoids had DNA methylation (DNAm) changes in blood. However, further investigation of the extent to which glucocorticoids affect DNAm across a larger proportion of the genome is needed.

methodsBuccal samples were collected before and after synthetic glucocorticoid treatment in the context of a dental procedure. This included 30 tooth extraction surgery patients who received 10 mg of dexamethasone. Genome-wide DNAm was assessed with the Infinium HumanMethylationEPIC array.

resultsFive CpGs showed genome-wide significant DNAm changes that were >10%. These differentially methylated CpGs were in or nearest the following genes: ZNF438, KLHDC10, miR-544 or CRABP1, DPH5, and WDFY2. Using previously published datasets of human blood gene expression changes following dexamethasone exposure, a significant proportion of genes with false-discovery-rate-adjusted significant CpGs were also differentially expressed. A pathway analysis of the genes with false-discovery-rate-adjusted significant CpGs revealed significant enrichment of olfactory transduction, pentose and glucuronate interconversions, ascorbate and aldarate metabolism, and steroid hormone biosynthesis pathways.

conclusionHigh-dose synthetic glucocorticoid administration in the setting of a dental procedure was significantly associated with DNAm changes within buccal samples. These findings are consistent with prior findings of an influence of glucocorticoids on DNAm in humans.

Indexed as

AdultCpG IslandsDexamethasoneDNA MethylationFemaleGene ExpressionGenome, HumanGlucocorticoidsHumansMaleMouth MucosaOral Surgical ProceduresYoung AdultDexamethasoneGlucocorticoidsdexamethasoneDNA methylationepigenomicsglucocorticoidsstress (psychological)

Identifiers

PMID30821055
PMCPMC6561812
OpenAlexW2918862101

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.