Evidence map›Paper›PMID 30820638›Full record

ArticleCurrent microbiology2019

Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

Fernando Uriel Rojas-Rojas, David Sánchez-López, Erika Yanet Tapia-García, Ivan Arroyo-Herrera, Maskit Maymon, Ethan Humm, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan and 11 more

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Compilation of the Antimicrobial Compounds Produced byMolecules (Basel, Switzerland) · 2023
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Fernando Uriel Rojas-RojasInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
David Sánchez-LópezInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Erika Yanet Tapia-GarcíaInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Ivan Arroyo-HerreraInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Maskit MaymonDepartment of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
Ethan HummDepartment of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
Marcel HuntemannDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Alicia ClumDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Manoj PillayDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Krishnaveni PalaniappanDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Neha VargheseDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Natalia MikhailovaDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Dimitrios StamatisDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
T B K ReddyDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Natalia IvanovaDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Nikos KyrpidesDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Tanja WoykeDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Nicole ShapiroDOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
Ann M HirschDepartment of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
J Antonio IbarraInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Paulina Estrada-de Los SantosInstituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico. pestradadelossantos@gmail.com.ORCID http://orcid.org/0000-0003-2407-0284

Funding

Office of Science DE-AC02-05CH11231
6 · The paper itself

Abstract

Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.

Indexed as

AntibiosisBurkholderia cepacia complexGenome, BacterialBacteriocinsBurkholderia cenocepaciaCarbonChitinasesMexicoNitrogenRhizosphereSequence Analysis, DNASiderophoresSoil MicrobiologySolanum lycopersicumBacteriocinsCarbonChitinasesNitrogenSiderophores

Identifiers

PMID30820638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.