Evidence map›Paper›PMID 30820564›Full record

ArticleNucleic acids research2019

LARP4A recognizes polyA RNA via a novel binding mechanism mediated by disordered regions and involving the PAM2w motif, revealing interplay between PABP, LARP4A and mRNA.

Isabel Cruz-Gallardo, Luigi Martino, Geoff Kelly, R Andrew Atkinson, Roberta Trotta, Stefano De Tito, Pierre Coleman, Zainab Ahdash, Yifei Gu, Tam T T Bui and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

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  6. Biomolecular NMR assignments · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Isabel Cruz-GallardoRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Luigi MartinoRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Geoff KellyMRC Biomedical NMR Centre, The Francis Crick Institute, London NW1 1AT, UK.
R Andrew AtkinsonRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Roberta TrottaRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Stefano De TitoRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Pierre ColemanRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Zainab AhdashDepartment of Chemistry, King's College London, London SE1 1DB, UK.
Yifei GuRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Tam T T BuiRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.
Maria R ConteRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, UK.

Funding

Medical Research Council FC001029Wellcome Trust FC001029
6 · The paper itself

Abstract

LARP4A belongs to the ancient RNA-binding protein superfamily of La-related proteins (LARPs). In humans, it acts mainly by stabilizing mRNAs, enhancing translation and controlling polyA lengths of heterologous mRNAs. These activities are known to implicate its association with mRNA, protein partners and translating ribosomes, albeit molecular details are missing. Here, we characterize the direct interaction between LARP4A, oligoA RNA and the MLLE domain of the PolyA-binding protein (PABP). Our study shows that LARP4A-oligoA association entails novel RNA recognition features involving the N-terminal region of the protein that exists in a semi-disordered state and lacks any recognizable RNA-binding motif. Against expectations, we show that the La module, the conserved RNA-binding unit across LARPs, is not the principal determinant for oligoA interaction, only contributing to binding to a limited degree. Furthermore, the variant PABP-interacting motif 2 (PAM2w) featured in the N-terminal region of LARP4A was found to be important for both RNA and PABP recognition, revealing a new role for this protein-protein binding motif. Our analysis demonstrates the mutual exclusive nature of the PAM2w-mediated interactions, thereby unveiling a tantalizing interplay between LARP4A, polyA and PABP.

Indexed as

Amino Acid MotifsAutoantigensBinding SitesCloning, MolecularEscherichia coliGene ExpressionGenetic VectorsHumansKineticsModels, MolecularPoly APoly(A)-Binding ProteinsProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsAutoantigensPoly APoly(A)-Binding ProteinsRecombinant ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerSS-B Antigen

Identifiers

PMID30820564
PMCPMC6486636

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.