Evidence map›Paper›PMID 30820151›Full record

ArticleMolecular vision2019

A novel intronic mutation of

Yasmin Tatour, Jonathan Tamaiev, Shamaly Shamaly, Roberto Colombo, Ephrat Bril, Tom Rabinowitz, Alona Yaakobi, Eedy Mezer, Rina Leibu, Beatrice Tiosano and 5 more

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Genetic dissection of non-syndromic retinitis pigmentosa.Indian journal of ophthalmology · 2022
    Review
  5. Article
  6. Review
  7. Next-Generation Sequencing Applications for Inherited Retinal Diseases.International journal of molecular sciences · 2021
    Review
  8. Clinical Phenotype ofInternational journal of molecular sciences · 2021
    Observational
  9. Improved noninvasive fetal variant calling using standardized benchmarking approaches.Computational and structural biotechnology journal · 2021
    Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Yasmin TatourRuth & Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.
Jonathan TamaievRuth & Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.
Shamaly ShamalyDepartment of Ophthalmology, Bnai Zion Medical Center, Haifa, Israel.
Roberto ColomboInstitute of Clinical Biochemistry, Faculty of Medicine, Catholic University of the Sacred Heart, Milan, Italy.
Ephrat BrilDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Tom RabinowitzFaculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Alona YaakobiDepartment of Ophthalmology, Hillel Yaffe Medical Center, Hadera, Israel.
Eedy MezerRuth & Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.
Rina LeibuAlberto Moscona Department of Ophthalmology, Rambam Health Care Center, Haifa, Israel.
Beatrice TiosanoRuth & Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.
Noam ShomronFaculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Itay ChowersDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Eyal BaninDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Dror SharonDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Tamar Ben-YosefRuth & Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.
Technion – Israel Institute of Technology · ILHadassah Medical Center · ILTel Aviv University · ILBnai Zion Medical Center · ILFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITHillel Yaffe Medical Center · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: To identify the genetic basis for retinitis pigmentosa (RP) in a cohort of Jewish patients from Caucasia. Methods: Patients underwent a detailed ophthalmic evaluation, including funduscopic examination, visual field testing, optical coherence tomography (OCT), and electrophysiological tests, electroretinography (ERG) and visual evoked potentials (VEP). Genetic analysis was performed with a combination of whole exome sequencing (WES) and Sanger sequencing. Bioinformatic analysis of the WES results was performed via a customized pipeline. Pathogenicity of the identified intronic variant was evaluated in silico using the web tool Human Splicing Finder, and in vitro, using a minigene-based splicing assay. Linkage disequilibrium (LD) analysis was used to demonstrate a founder effect, and the decay of LD over generations around the mutation in Caucasus Jewish chromosomes was modeled to estimate the age of the most recent common ancestor. Results: In eight patients with RP from six unrelated families, all of Caucasus Jewish ancestry, we identified a novel homozygous intronic variant, located at position -9 of Conclusions: The

Indexed as

Frameshift MutationJewsRNA Splice SitesAdultAgedComputational BiologyCyclic Nucleotide Phosphodiesterases, Type 6ElectroretinographyEvoked Potentials, VisualExome SequencingExonsFemaleFounder EffectGene ExpressionGenes, RecessiveHomozygoteCyclic Nucleotide Phosphodiesterases, Type 6PDE6B protein, humanRNA Splice Sites

Identifiers

PMID30820151
PMCPMC6386512
OpenAlexW2941269147

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.