Evidence map›Paper›PMID 30818355›Full record

ArticlePloS one2019

RcsB regulation of the YfdX-mediated acid stress response in Klebsiella pneumoniae CG43S3.

Chia-Jui Liu, Ching-Ting Lin, Jo-Di Chiang, Chen-Yi Lin, Yen-Xi Tay, Li-Cheng Fan, Kuan-Nan Peng, Chih-Huan Lin, Hwei-Ling Peng

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Chia-Jui LiuDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.ORCID 0000-0002-0770-8875
Ching-Ting LinSchool of Chinese Medicine, China Medical University, Taichung, Taiwan, Republic of China.
Jo-Di ChiangDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Chen-Yi LinDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Yen-Xi TayInstitute of Molecular Medicine and Biological Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Li-Cheng FanDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Kuan-Nan PengDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Chih-Huan LinInstitute of Molecular Medicine and Biological Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.
Hwei-Ling PengDepartment of Biological Science and Technology, School of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, Republic of China.ORCID 0000-0002-8892-8617
National Yang Ming Chiao Tung University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Klebsiella pneumoniae CG43S3, deletion of the response regulator gene rcsB reduced the capsular polysaccharide amount and survival on exposure to acid stress. A comparison of the pH 4.4-induced proteomes between CG43S3 and CG43S3ΔrcsB revealed numerous differentially expressed proteins and one of them, YfdX, which has recently been reported as a periplasmic protein, was absent in CG43S3ΔrcsB. Acid survival analysis was then conducted to determine its role in the acid stress response. Deletion of yfdX increased the sensitivity of K. pneumoniae CG43S3 to a pH of 2.5, and transforming the mutant with a plasmid carrying yfdX restored the acid resistance (AR) levels. In addition, the effect of yfdX deletion was cross-complemented by the expression of the periplasmic chaperone HdeA. Furthermore, the purified recombinant protein YfdX reduced the acid-induced protein aggregation, suggesting that YfdX as well as HdeA functions as a chaperone. The following promoter activity measurement revealed that rcsB deletion reduced the expression of yfdX after the bacteria were subjected to pH 4.4 adaptation. Western blot analysis also revealed that YfdX production was inhibited by rcsB deletion and only the plasmid expressing RcsB or the nonphosphorylated form of RcsB, RcsBD56A, could restore the YfdX production, and the RcsB-mediated complementation was no longer observed when the sensor kinase RcsD gene was deleted. In conclusion, this is the first study demonstrating that YfdX may be involved in the acid stress response as a periplasmic chaperone and that RcsB positively regulates the acid stress response partly through activation of yfdX expression. Moreover, the phosphorylation status of RcsB may affect the YfdX expression under acidic conditions.

Indexed as

AcidsBacterial ProteinsGene DeletionGene Expression Regulation, BacterialGenes, BacterialGenes, RegulatorHumansHydrogen-Ion ConcentrationKlebsiella pneumoniaeMutagenesis, Site-DirectedPhosphorylationPlasmidsPromoter Regions, GeneticStress, PhysiologicalAcidsBacterial ProteinsRcsB protein, Bacteria

Identifiers

PMID30818355
PMCPMC6394985
OpenAlexW2918669667

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.