Evidence map›Paper›PMID 30816263›Full record

ArticleScientific reports2019

Utilisation of Ambient Laser Desorption Ionisation Mass Spectrometry (ALDI-MS) Improves Lipid-Based Microbial Species Level Identification.

Simon J S Cameron, Zsolt Bodai, Burak Temelkuran, Alvaro Perdones-Montero, Frances Bolt, Adam Burke, Kate Alexander-Hardiman, Michel Salzet, Isabelle Fournier, Monica Rebec and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Identification ofMicroorganisms · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Automated 3D Sampling and Imaging of Uneven Sample Surfaces with LA-REIMS.Journal of the American Society for Mass Spectrometry · 2022
    Article
  10. Liquid Extraction Surface Analysis Mass Spectrometry of ESKAPE Pathogens.Journal of the American Society for Mass Spectrometry · 2021
    Article
  11. Observational
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Simon J S CameronDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Zsolt BodaiDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Burak TemelkuranThe Hamlyn Centre, Department of Computing, Faculty of Engineering, Imperial College London, South Kensington Campus, London, UK.
Alvaro Perdones-MonteroDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Frances BoltDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Adam BurkeDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Kate Alexander-HardimanDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK.
Michel SalzetLaboratoire Proteomique, Reponse Inflammatoire et Spectrometrie de Mass (PRISM), Universite de Lille, Lille, France.
Isabelle FournierLaboratoire Proteomique, Reponse Inflammatoire et Spectrometrie de Mass (PRISM), Universite de Lille, Lille, France.ORCID 0000-0003-1096-5044
Monica RebecDepartment of Microbiology, Imperial College Healthcare NHS Trust, Charing Cross Hospital, London, UK.
Zoltán TakátsDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington Campus, London, UK. z.takats@imperial.ac.uk.
Imperial College London · GBUniversité de Lille · FRImperial College Healthcare NHS Trust · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L020858/1
6 · The paper itself

Abstract

The accurate and timely identification of the causative organism of infection is important in ensuring the optimum treatment regimen is prescribed for a patient. Rapid evaporative ionisation mass spectrometry (REIMS), using electrical diathermy for the thermal disruption of a sample, has been shown to provide fast and accurate identification of microorganisms directly from culture. However, this method requires contact to be made between the REIMS probe and microbial biomass; resulting in the necessity to clean or replace the probes between analyses. Here, optimisation and utilisation of ambient laser desorption ionisation (ALDI) for improved speciation accuracy and analytical throughput is shown. Optimisation was completed on 15 isolates of Escherichia coli, showing 5 W in pulsatile mode produced the highest signal-to-noise ratio. These parameters were used in the analysis of 150 clinical isolates from ten microbial species, resulting in a speciation accuracy of 99.4% - higher than all previously reported REIMS modalities. Comparison of spectral data showed high levels of similarity between previously published electrical diathermy REIMS data. ALDI does not require contact to be made with the sample during analysis, meaning analytical throughput can be substantially improved, and further, increases the range of sample types which can be analysed in potential direct-from-sample pathogen detection.

Indexed as

Escherichia coliEscherichia coli InfectionsHumansLasersLipidsMolecular Diagnostic TechniquesSensitivity and SpecificitySpectrometry, Mass, Electrospray IonizationLipids

Identifiers

PMID30816263
PMCPMC6395639
OpenAlexW2919137327

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.