Evidence map›Paper›PMID 30816253›Full record

ArticleScientific reports2019

High-throughput Evaluation of Protein Migration and Localization after Laser Micro-Irradiation.

Sebastian Oeck, Nathalie M Malewicz, Adam Krysztofiak, Audrey Turchick, Verena Jendrossek, Peter M Glazer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Poly-ADP-ribosylation dynamics, signaling, and analysis.Environmental and molecular mutagenesis · 2024
    Review
  4. Article
  5. Review
  6. Streamlining Quantitative Analysis of Long RNA Sequencing Reads.International journal of molecular sciences · 2020
    Article
  7. Optimizing biodegradable nanoparticle size for tissue-specific delivery.Journal of controlled release : official journal of the Controlled Release Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sebastian OeckDepartment of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT, 06520, USA. sebastian.oeck@yale.edu.ORCID 0000-0001-9695-8771
Nathalie M MalewiczDepartment of Anaesthesiology, Yale University School of Medicine, New Haven, CT, 06520, USA.ORCID 0000-0002-9045-203X
Adam KrysztofiakInstitute of Cell Biology (Cancer Research), University Hospital Essen, University of Duisburg-Essen, Essen, 45122, Germany.
Audrey TurchickDepartment of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Verena JendrossekInstitute of Cell Biology (Cancer Research), University Hospital Essen, University of Duisburg-Essen, Essen, 45122, Germany.ORCID 0000-0003-1058-2107
Peter M GlazerDepartment of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT, 06520, USA. peter.glazer@yale.edu.ORCID 0000-0003-4525-5560
Yale University · USUniversity of Duisburg-Essen · DE

Funding

Translational CoreP01DK057751 · NIDDK · YALE UNIVERSITY · PI YANG, XIAOYONG · 2001 to 2020
$25.6M
Targeting DNA Repair for Cancer Therapy.R35CA197574 · NCI · YALE UNIVERSITY · PI PETER M GLAZER · 2017 to 2026
$8.6M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
Oncometabolites, DNA Repair, and CancerR01ES005775 · NIEHS · YALE UNIVERSITY · PI PETER M GLAZER · 1998 to 2026
$8.0M
INSTITUTIONAL NATIONAL RESEARCH SERVICE AWARDT32GM007324 · NIGMS · YALE UNIVERSITY · PI BENNETT, ANTON M · 1987 to 2022
$6.2M
NCI NIH HHS R35 CA197574NICHD NIH HHS T32 HD007149NIDDK NIH HHS P01 DK057751NIEHS NIH HHS R01 ES005775NIGMS NIH HHS T32 GM007324
6 · The paper itself

Abstract

DNA- and histone-related research frequently comprises the quantitative analysis of protein modifications, such as histone phosphorylation. Analysis of accumulation and disappearance of protein foci are used to monitor DNA damage and repair kinetics. If the protein of interest doesn't accumulate in foci, laser micro-irradiation of single nuclei provides an alternative method to monitor DNA repair proteins and histone dynamics at the DNA damage site. We have developed an automated evaluation tool for standardized, high-throughput analysis of micro-irradiated cells featuring single cell background subtraction and detection across multiple fluorescence channels, allowing for robust statistics.

Indexed as

DNA Breaks, Double-StrandedDNA DamageDNA RepairHistone CodeHistonesHumansLasersMicroscopy, FluorescencePhosphorylationProtein Processing, Post-TranslationalProteinsSingle-Cell AnalysisHistonesProteins

Identifiers

PMID30816253
PMCPMC6395640
OpenAlexW2917081499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.