Evidence map›Paper›PMID 30816248›Full record

ArticleScientific reports2019

The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation.

Robin Axel Ruiz-Zamora, Simon Guillaumé, Youssra K Al-Hilaly, Zahraa Al-Garawi, Francisco Javier Rodríguez-Alvarez, Guadalupe Zavala-Padilla, Julio I Pérez-Carreón, Sandra L Rodríguez-Ambriz, Guillermo A Herrera, Baltazar Becerril-Luján and 4 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Robin Axel Ruiz-ZamoraInstituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, Ciudad de México, 14610, Mexico.
Simon GuillauméSchool of Life Sciences, University of Sussex, Falmer, Brighton, East Sussex, BN1 9QG, United Kingdom.
Youssra K Al-HilalySchool of Life Sciences, University of Sussex, Falmer, Brighton, East Sussex, BN1 9QG, United Kingdom.ORCID 0000-0003-2289-4597
Zahraa Al-GarawiSchool of Life Sciences, University of Sussex, Falmer, Brighton, East Sussex, BN1 9QG, United Kingdom.
Francisco Javier Rodríguez-AlvarezInstituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, Ciudad de México, 14610, Mexico.
Guadalupe Zavala-PadillaInstituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, 62210, Morelos, Mexico.
Julio I Pérez-CarreónInstituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, Ciudad de México, 14610, Mexico.
Sandra L Rodríguez-AmbrizCentro de Desarrollo de Productos Bióticos, Instituto Politécnico Nacional, Carr. Yautepec-Jojutla Km 6, Calle CEPROBI No. 8, Col. San Isidro, Yautepec, 62731, Morelos, Mexico.
Guillermo A HerreraDepartment of Pathology and Translational Pathobiology, Louisiana State University Health Sciences Center Shreveport, 1501 Kings Hwy, Shreveport, LA, 71103, USA.
Baltazar Becerril-LujánInstituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, 62210, Morelos, Mexico.
Adrián Ochoa-LeyvaInstituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, 62210, Morelos, Mexico.ORCID 0000-0002-4701-2303
Jorge Melendez-ZajglaInstituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, Ciudad de México, 14610, Mexico.ORCID 0000-0002-2209-1607
Louise SerpellSchool of Life Sciences, University of Sussex, Falmer, Brighton, East Sussex, BN1 9QG, United Kingdom.ORCID 0000-0001-9335-7751
Luis Del Pozo-YaunerInstituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, Ciudad de México, 14610, Mexico. ldelpo@lsuhsc.edu.ORCID 0000-0002-2551-0301

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunoglobulin light chain-derived (AL) amyloidosis is a debilitating disease without known cure. Almost nothing is known about the structural factors driving the amyloidogenesis of the light chains. This study aimed to identify the fibrillogenic hotspots of the model protein 6aJL2 and in pursuing this goal, two complementary approaches were applied. One of them was based on several web-based computational tools optimized to predict fibrillogenic/aggregation-prone sequences based on different structural and biophysical properties of the polypeptide chain. Then, the predictions were confirmed with an ad-hoc synthetic peptide library. In the second approach, 6aJL2 protein was proteolyzed with trypsin, and the products incubated in aggregation-promoting conditions. Then, the aggregation-prone fragments were identified by combining standard proteomic methods, and the results validated with a set of synthetic peptides with the sequence of the tryptic fragments. Both strategies coincided to identify a fibrillogenic hotspot located at the CDR1 and β-strand C of the protein, which was confirmed by scanning proline mutagenesis analysis. However, only the proteolysis-based strategy revealed additional fibrillogenic hotspots in two other regions of the protein. It was shown that a fibrillogenic hotspot associated to the CDR1 is also encoded by several κ and λ germline variable domain gene segments. Some parts of this study have been included in the chapter "The Structural Determinants of the Immunoglobulin Light Chain Amyloid Aggregation", published in Physical Biology of Proteins and Peptides, Springer 2015 (ISBN 978-3-319-21687-4).

Indexed as

Complementarity Determining RegionsAmino Acid SequenceAmyloidHumansImmunoglobulin Light-chain AmyloidosisImmunoglobulin Light ChainsModels, MolecularProtein Aggregation, PathologicalProtein Conformation, beta-StrandProtein MultimerizationAmyloidComplementarity Determining RegionsImmunoglobulin Light Chains

Identifiers

PMID30816248
PMCPMC6395779

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.