Evidence map›Paper›PMID 30815180›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2018

Integrated machine learning pipeline for aberrant biomarker enrichment (i-mAB): characterizing clusters of differentiation within a compendium of systemic lupus erythematosus patients.

Trang T Le, Nigel O Blackwood, Jaclyn N Taroni, Weixuan Fu, Matthew K Breitenstein

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Approaching neural net feature interpretation using stacked autoencoders: gene expression profiling of systemic lupus erythematosus patients.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2019
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Trang T LeDepartment of Biostatistics, Epidemiology, and Informatics.
Nigel O BlackwoodDepartment of Biostatistics, Epidemiology, and Informatics.
Jaclyn N TaroniDepartment of Systems Pharmacology and Translational Therapeutics; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Weixuan FuDepartment of Biostatistics, Epidemiology, and Informatics.
Matthew K BreitensteinDepartment of Biostatistics, Epidemiology, and Informatics.

Funding

Mayo Cancer Genetic Epidemiology Training ProgramR25CA092049 · NCI · MAYO CLINIC ROCHESTER · PI PETERSEN, GLORIA M., VACHON, CELINE M · 2001 to 2018
$5.3M
NCI NIH HHS R25 CA092049
6 · The paper itself

Abstract

Clusters of differentiation (

Indexed as

Machine LearningAdolescentAdultAgedAntigens, CD20BiomarkersCase-Control StudiesCell Adhesion MoleculesCell DifferentiationChildFemaleHumansKi-1 AntigenLupus Erythematosus, SystemicMaleMiddle AgedAntigens, CD20BiomarkersCell Adhesion MoleculesKi-1 AntigenSialic Acid Binding Ig-like Lectin 2clusters of differentiationdata re-useRelief-based machine learning; systemic lupus erythematosustranscriptomicstrans-disease biomarker profiletranslational bioinformatics pipeline

Identifiers

PMID30815180
PMCPMC6371296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.