Evidence map›Paper›PMID 30815167›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2018

Improving breast cancer risk prediction by using demographic risk factors, abnormality features on mammograms and genetic variants.

Shara I Feld, Kaitlin M Woo, Roxana Alexandridis, Yirong Wu, Jie Liu, Peggy Peissig, Adedayo A Onitilo, Jennifer Cox, C David Page, Elizabeth S Burnside

Open access · greenAbstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Prediction of Breast Cancer using Machine Learning Approaches.Journal of biomedical physics & engineering · 2022
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Shara I FeldUniversity of Wisconsin Department of Radiology, Madison, WI.
Kaitlin M WooUniversity of Wisconsin Department of Biostatistics and Medical Informatics, Madison, WI.
Roxana AlexandridisUniversity of Wisconsin Department of Biostatistics and Medical Informatics, Madison, WI.
Yirong WuUniversity of Wisconsin Department of Radiology, Madison, WI.
Jie LiuUniversity of Washington Department of Genome Sciences, Seattle, WA.
Peggy PeissigMarshfield Clinic Research Institute, Marshfield, WI.
Adedayo A OnitiloMarshfield Clinic Research Institute, Marshfield, WI.
Jennifer CoxUniversity of Wisconsin Department of Radiology, Madison, WI.
C David PageUniversity of Wisconsin Department of Biostatistics and Medical Informatics, Madison, WI.
Elizabeth S BurnsideUniversity of Wisconsin Department of Radiology, Madison, WI.
University of Wisconsin–Madison · USMarshfield Clinic · USUniversity of Washington · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Christian Capitini · 1985 to 2026
$142.6M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
TrainingU54AI117924 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CRAVEN, MARK W. · 2014 to 2018
$11.3M
Machine Learning for Identifying Adverse Drug EventsR01GM097618 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CALDWELL, MICHAEL DEFOIX, HANSEN, RICHARD A. · 2011 to 2018
$3.8M
Genome-Wide Study of Cataract and Low HDL in the Personalized Medicine Research PU01HG004608 · NHGRI · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI MCCARTY, CATHERINE ANNE · 2007 to 2010
$3.3M
Secure Sharing of Clinical History & Genetic Data: Empowering Predictive Pers. MeR01LM011028 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI PAGE, CHARLES DAVID · 2011 to 2014
$2.2M
Breast Cancer GWAS: Function and Environmental InteractionsR01ES017400 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI GOULD, MICHAEL N, NEWTON, MICHAEL A · 2009 to 2013
$2.1M
Machine Learning for Improved Mammography ScreeningR01CA127379 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI BURNSIDE, ELIZABETH S · 2007 to 2010
$1.4M
NCATS NIH HHS UL1 TR000427NCI NIH HHS P30 CA014520NCI NIH HHS R01 CA127379NHGRI NIH HHS U01 HG004608NIAID NIH HHS U54 AI117924NIEHS NIH HHS R01 ES017400NIGMS NIH HHS R01 GM097618NLM NIH HHS R01 LM011028
6 · The paper itself

Abstract

The predictive capability of combining demographic risk factors, germline genetic variants, and mammogram abnormality features for breast cancer risk prediction is poorly understood. We evaluated the predictive performance of combinations of demographic risk factors, high risk single nucleotide polymorphisms (SNPs), and mammography features for women recommended for breast biopsy in a retrospective case-control study (n = 768) with four logistic regression models. The AUC of the baseline demographic features model was 0.580. Both genetic variants and mammography abnormality features augmented the performance of the baseline model: demographics + SNP (AUC =0.668), demographics + mammography (AUC =0.702). Finally, we found that the demographics + SNP + mammography model (AUC = 0.753) had the greatest predictive power, with a significant performance improvement over the other models. The combination of demographic risk factors, genetic variants and imaging features improves breast cancer risk prediction over prior methods utilizing only a subset of these features.

Indexed as

Breast NeoplasmsMammographyAdultBiopsyBreastCase-Control StudiesFemaleHumansLogistic ModelsParityPolymorphism, Single NucleotidePregnancyRetrospective StudiesRisk AssessmentRisk FactorsROC Curve

Identifiers

PMID30815167
PMCPMC6371301
OpenAlexW2942003115

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.