Evidence map›Paper›PMID 30815087›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2018

How Sustainable are Biomedical Ontologies?

James Geller, Vipina K Keloth, Mark A Musen

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James GellerNew Jersey Institute of Technology, Newark, New Jersey, USA.
Vipina K KelothNew Jersey Institute of Technology, Newark, New Jersey, USA.
Mark A MusenStanford University, Stanford, CA.

Funding

A family-based framework of quality assurance for biomedical ontologiesR01CA190779 · NCI · NEW JERSEY INSTITUTE OF TECHNOLOGY · PI PERL, YEHOSHUA · 2015 to 2017
$1.8M
NCI NIH HHS R01 CA190779
6 · The paper itself

Abstract

BioPortal is widely regarded to be the world's most comprehensive repository of biomedical ontologies. With a coverage of many biomedical subfields by 716 ontologies (June 27, 2018), BioPortal is an extremely diverse repository. BioPortal maintains easily accessible information about the ontologies submitted by ontology curators. This includes size (concepts/classes, relationships/properties), number of projects, update history, and access history. Ontologies vary by size (from a few concepts to hundreds of thousands), by frequency of update/visit and by number of projects. Interestingly, some ontologies are rarely updated even though they contain thousands of concepts. In an informal email inquiry, we attempted to understand the reasons why ontologies that were built with a major investment of effort are apparently not sustained. Our analysis indicates that lack of funding, unavailability of human resources, and folding of ontologies into other ontologies are the most common among several other factors for discontinued maintenance of these ontologies.

Indexed as

Biological OntologiesAccess to InformationBibliometricsHumans

Identifiers

PMID30815087
PMCPMC6371329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.