Evidence map›Paper›PMID 30815082›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2018

Towards the Inference of Social and Behavioral Determinants of Sexual Health: Development of a Gold-Standard Corpus with Semi-Supervised Learning.

Daniel J Feller, Jason Zucker, Oliver Bear Don't Walk, Bharat Srikishan, Roxana Martinez, Henry Evans, Michael T Yin, Peter Gordon, Noémie Elhadad

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
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  7. Article
  8. Article
  9. On the development and validation of large language model-based classifiers for identifying social determinants of health.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. The 2022 n2c2/UW shared task on extracting social determinants of health.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  14. Article
  15. Article
  16. Benchmarking Transformer-Based Models for Identifying Social Determinants of Health in Clinical Notes.Proceedings. IEEE International Conference on Healthcare Informatics · 2023
    Article
  17. Machine learning approaches for electronic health records phenotyping: a methodical review.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  18. Article
  19. Capturing Individual-level Social Determinants from Clinical Text.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniel J FellerColumbia University, New York, NY, USA.
Jason ZuckerColumbia University, New York, NY, USA.
Oliver Bear Don't WalkColumbia University, New York, NY, USA.
Bharat SrikishanColumbia University, New York, NY, USA.
Roxana MartinezColumbia University, New York, NY, USA.
Henry EvansColumbia University, New York, NY, USA.
Michael T YinColumbia University, New York, NY, USA.
Peter GordonColumbia University, New York, NY, USA.
Noémie ElhadadColumbia University, New York, NY, USA.

Funding

Training in Biomedical Informatics at Columbia UniversityT15LM007079 · NLM · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NOEMIE ELHADAD, GEORGE M HRIPCSAK · 1992 to 2026
$28.9M
Extended Methods and Software Development for Health NLPR01GM114355 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BETHARD, STEVEN, SAVOVA, GUERGANA K. · 2016 to 2024
$5.0M
Training in Pediatric Infectious DiseasesT32AI007531 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRINCE, ALICE S, SAIMAN, LISA · 1998 to 2023
$4.0M
NIAID NIH HHS L30 AI133789NIGMS NIH HHS R01 GM114355NLM NIH HHS T15 LM007079
6 · The paper itself

Abstract

Social and behavioral determinants of health (SBDH) are environmental and behavioral factors that are increasingly recognized for their impact on health outcomes. We describe ongoing research to extract SBDH related to sexual health from clinical documentation. Our work addresses several challenges. First, there is no standard set of SBDHs for sexual health; we describe our curation of 38 such SBDHs. Second, it is unknown how SBDH related to sexual health are expressed in clinical notes; we detail the characteristics of an annotated corpus. Third, SBDH documentations are rare; we describe the use of semi-supervised learning to accelerate the annotation process by identifying notes likely to document SBDH. Fourth, we describe preliminary results to infer an array of SBDH from clinical documentation using supervised learning.

Indexed as

Electronic Health RecordsSexual HealthSocial Determinants of HealthSupervised Machine LearningDocumentationFemaleHealth Risk BehaviorsHumansMaleNatural Language Processing

Identifiers

PMID30815082
PMCPMC6371339

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.