Evidence map›Paper›PMID 30814643›Full record

ArticleScientific reports2019

Evolutionary Insight into the Clock-Associated PRR5 Transcriptional Network of Flowering Plants.

Yosuke Toda, Toru Kudo, Toshinori Kinoshita, Norihito Nakamichi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  8. The ATXN2 OrthologsInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Review
  11. Molecular Characterization and Expression Profile ofPlants (Basel, Switzerland) · 2020
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yosuke TodaPrecursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Kawaguchi, Saitama, 332-0022, Japan.
Toru KudoMetabologenomics, Inc., 246-2 Mizukami Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Toshinori KinoshitaInstitute of Transformative Bio-molecules, Nagoya University, Furo-cho, Chikusa, Nagoya, 464-8602, Japan.
Norihito NakamichiInstitute of Transformative Bio-molecules, Nagoya University, Furo-cho, Chikusa, Nagoya, 464-8602, Japan. nnakamichi@itbm.nagoya-u.ac.jp.
Nagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circadian clocks regulate the daily timing of metabolic, physiological, and behavioral activities to adapt organisms to day-night cycles. In the model plant Arabidopsis thaliana, transcript-translational feedback loops (TTFL) constitute the circadian clock, which is conserved among flowering plants. Arabidopsis TTFL directly regulates key genes in the clock-output pathways, whereas the pathways for clock-output control in other plants is largely unknown. Here, we propose that the transcriptional networks of clock-associated pseudo-response regulators (PRRs) are conserved among flowering plants. Most PRR genes from Arabidopsis, poplar, and rice encode potential transcriptional repressors. The PRR5-target-like gene group includes genes that encode key transcription factors for flowering time regulation, cell elongation, and chloroplast gene expression. The 5'-upstream regions of PRR5-target-like genes from poplar and rice tend to contain G-box-like elements that are potentially recognized by PRRs in vivo as has been shown in Arabidopsis. Expression of PRR5-target-like genes from poplar and rice tends to decrease when PRRs are expressed, possibly suggesting that the transcriptional network of PRRs is evolutionarily conserved in these plants.

Indexed as

ArabidopsisArabidopsis ProteinsCircadian ClocksCircadian RhythmGene Expression Regulation, PlantGene Regulatory NetworksMagnoliopsidaOryzaPopulusPromoter Regions, GeneticRepressor ProteinsTranscription FactorsArabidopsis ProteinsPRR5 protein, ArabidopsisRepressor ProteinsTranscription Factors

Identifiers

PMID30814643
PMCPMC6393427
OpenAlexW2920750935

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.