Evidence map›Paper›PMID 30814064›Full record

ArticleDisease models & mechanisms2019

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy.

Emily J Jones, Zoe J Matthews, Lejla Gul, Padhmanand Sudhakar, Agatha Treveil, Devina Divekar, Jasmine Buck, Tomasz Wrzesinski, Matthew Jefferson, Stuart D Armstrong and 10 more

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Pharmaceuticals (Basel, Switzerland) · 2025
    Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Everything You Always Wanted to Know About Organoid-Based Models (and Never Dared to Ask).Cellular and molecular gastroenterology and hepatology · 2022
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. The Uptake, Trafficking, and Biodistribution ofFrontiers in microbiology · 2020
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Emily J JonesEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Zoe J MatthewsNorwich Medical School, University of East Anglia, Norwich NR4 7TJ, UK.
Lejla GulEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Padhmanand SudhakarEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Agatha TreveilEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.ORCID 0000-0002-5600-8189
Devina DivekarQuadram Institute, Norwich Research Park, Norwich NR4 7UA, UK.
Jasmine BuckNorwich Medical School, University of East Anglia, Norwich NR4 7TJ, UK.
Tomasz WrzesinskiEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Matthew JeffersonNorwich Medical School, University of East Anglia, Norwich NR4 7TJ, UK.
Stuart D ArmstrongNational Institute of Health Research, University of Liverpool, Liverpool L3 5RF, UK.
Lindsay J HallQuadram Institute, Norwich Research Park, Norwich NR4 7UA, UK.
Alastair J M WatsonQuadram Institute, Norwich Research Park, Norwich NR4 7UA, UK.
Simon R CardingQuadram Institute, Norwich Research Park, Norwich NR4 7UA, UK.
Wilfried HaertyEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Federica Di PalmaEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Ulrike MayerSchool of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK.
Penny P PowellNorwich Medical School, University of East Anglia, Norwich NR4 7TJ, UK.
Isabelle HautefortEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.
Tom WilemanQuadram Institute, Norwich Research Park, Norwich NR4 7UA, UK.
Tamas KorcsmarosEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK Tamas.Korcsmaros@earlham.ac.uk.ORCID 0000-0003-1717-996X
University of East Anglia · GBNorwich Research Park · GBUniversity of Liverpool · GB

Funding

Biotechnology and Biological Sciences Research Council BB/CCG1720/1Biotechnology and Biological Sciences Research Council BB/CSP17270/1Biotechnology and Biological Sciences Research Council BB/J004529/1Biotechnology and Biological Sciences Research Council BB/J01754X/1Biotechnology and Biological Sciences Research Council BB/M011216/1Biotechnology and Biological Sciences Research Council BB/P016774/1Biotechnology and Biological Sciences Research Council BBS/E/F/00044409Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10353Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10355Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10356Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9817Wellcome TrustWellcome Trust 100,974/C/13/Z
6 · The paper itself

Abstract

Paneth cells are key epithelial cells that provide an antimicrobial barrier and maintain integrity of the small-intestinal stem cell niche. Paneth cell abnormalities are unfortunately detrimental to gut health and are often associated with digestive pathologies such as Crohn's disease or infections. Similar alterations are observed in individuals with impaired autophagy, a process that recycles cellular components. The direct effect of autophagy impairment on Paneth cells has not been analysed. To investigate this, we generated a mouse model lacking

Indexed as

AutophagyProteomicsAnimalsAutophagy-Related ProteinsCarrier ProteinsEpithelial CellsExocytosisFemaleIntestinesMaleMice, Inbred C57BLOrganoidsPaneth CellsProteolysisReproducibility of ResultsTranscriptomeAtg16l1 protein, mouseAutophagy-Related ProteinsCarrier ProteinsAtg16l1Intestinal organoidsPaneth cellsQuantitative proteomicsSelective autophagy

Identifiers

PMID30814064
PMCPMC6451430
OpenAlexW2916264851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.