Evidence map›Paper›PMID 30811739›Full record

ArticleJournal of magnetic resonance imaging : JMRI2019

Automated image quality evaluation of structural brain MRI using an ensemble of deep learning networks.

Sheeba J Sujit, Ivan Coronado, Arash Kamali, Ponnada A Narayana, Refaat E Gabr

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Journal of magnetic resonance imaging : JMRI, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it, 71 citations in OpenAlex.

  1. Pooled it
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  9. Can we predict motion artifacts in clinical MRI before the scan completes?Proceedings of the International Society for Magnetic Resonance in Medicine ... Scientific Meeting and Exhibition. International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition · 2023
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  14. Deep learning enabled brain shunt valve identification using mobile phones.Computer methods and programs in biomedicine · 2021
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  19. Semi-Supervised Learning for Fetal Brain MRI Quality Assessment with ROI consistency.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sheeba J SujitDepartment of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, Texas, USA.ORCID 0000-0001-8302-7046
Ivan CoronadoDepartment of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, Texas, USA.
Arash KamaliDepartment of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, Texas, USA.
Ponnada A NarayanaDepartment of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, Texas, USA.
Refaat E GabrDepartment of Diagnostic and Interventional Imaging, University of Texas Health Science Center at Houston, Texas, USA.
The University of Texas Health Science Center at Houston · US

Funding

Predicting contrast enhancement in multiple sclerosis with real time texture analysisR56NS105857 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI NARAYANA, PONNADA A · 2018 to 2018
$536k
NINDS NIH HHS R56 NS105857
6 · The paper itself

Abstract

backgroundDeep learning (DL) is a promising methodology for automatic detection of abnormalities in brain MRI. PURPOSE: To automatically evaluate the quality of multicenter structural brain MRI images using an ensemble DL model based on deep convolutional neural networks (DCNNs). STUDY TYPE: Retrospective. POPULATION: The study included 1064 brain images of autism patients and healthy controls from the Autism Brain Imaging Data Exchange (ABIDE) database. MRI data from 110 multiple sclerosis patients from the CombiRx study were included for independent testing. SEQUENCE: T ASSESSMENT: The ABIDE data were separated into training (60%), validation (20%), and testing (20%) sets. The ensemble DL model combined the results from three cascaded networks trained separately on the three MRI image planes (axial, coronal, and sagittal). Each cascaded network consists of a DCNN followed by a fully connected network. The quality of image slices from each plane was evaluated by the DCNN and the resultant image scores were combined into a volumewise quality rating using the fully connected network. The DL predicted ratings were compared with manual quality evaluation by two experts. STATISTICAL TESTS: Receiver operating characteristic (ROC) curve, area under ROC curve (AUC), sensitivity, specificity, accuracy, and positive (PPV) and negative (NPV) predictive values.

resultsThe AUC, sensitivity, specificity, accuracy, PPV, and NPV for image quality evaluation of the ABIDE test set using the ensemble model were 0.90, 0.77, 0.85, 0.84, 0.42, and 0.96, respectively. On the CombiRx set the same model achieved performance of 0.71, 0.41, 0.84, 0.73, 0.48, and 0.80. DATA

conclusionThis study demonstrated the high accuracy of DL in evaluating image quality of structural brain MRI in multicenter studies. LEVEL OF EVIDENCE: 3 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2019;50:1260-1267.

Indexed as

AdolescentAdultAutistic DisorderBrainChildDeep LearningFemaleHumansImage Interpretation, Computer-AssistedMagnetic Resonance ImagingMaleMiddle AgedMultiple SclerosisNeural Networks, ComputerReproducibility of ResultsRetrospective Studiesbrain MRIdeep learningpostprocessingquality assessment

Identifiers

PMID30811739
PMCPMC6711839
OpenAlexW2916800028

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.