Evidence map›Paper›PMID 30811415›Full record

ArticlePloS one2019

Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain.

Rosa Mérida-García, Guozheng Liu, Sang He, Victoria Gonzalez-Dugo, Gabriel Dorado, Sergio Gálvez, Ignacio Solís, Pablo J Zarco-Tejada, Jochen C Reif, Pilar Hernandez

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
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  8. Novel Genetic Loci fromInternational journal of molecular sciences · 2023
    Article
  9. Review
  10. Wheat Omics: Advancements and Opportunities.Plants (Basel, Switzerland) · 2023
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Molecular Mapping and Genomics of Grain Yield in Durum Wheat: A Review.International journal of molecular sciences · 2020
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rosa Mérida-GarcíaInstituto de Agricultura Sostenible (IAS) Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, Córdoba, Spain.
Guozheng LiuDepartment of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstraße 3, Stadt Seeland, Germany.
Sang HeDepartment of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstraße 3, Stadt Seeland, Germany.
Victoria Gonzalez-DugoInstituto de Agricultura Sostenible (IAS) Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, Córdoba, Spain.
Gabriel DoradoDepartamento de Bioquímica y Biología Molecular, Campus Rabanales C6-1-E17, Campus de Excelencia Internacional Agroalimentario (ceiA3), Universidad de Córdoba, Córdoba, Spain.
Sergio GálvezUniversidad de Málaga, Andalucía Tech, ETSI Informática, Campus de Teatinos s/n, Málaga, Spain.
Ignacio SolísETSIA (University of Seville), Ctra de Utrera km1, Seville, Spain.
Pablo J Zarco-TejadaInstituto de Agricultura Sostenible (IAS) Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, Córdoba, Spain.
Jochen C ReifDepartment of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstraße 3, Stadt Seeland, Germany.
Pilar HernandezInstituto de Agricultura Sostenible (IAS) Consejo Superior de Investigaciones Científicas (CSIC), Alameda del Obispo s/n, Córdoba, Spain.ORCID 0000-0001-5166-4454

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Climatic conditions affect the growth, development and final crop production. As wheat is of paramount importance as a staple crop in the human diet, there is a growing need to study its abiotic stress adaptation through the performance of key breeding traits. New and complementary approaches, such as genome-wide association studies (GWAS) and genomic selection (GS), are used for the dissection of different agronomic traits. The present study focused on the dissection of agronomic and quality traits of interest (initial agronomic score, yield, gluten index, sedimentation index, specific weight, whole grain protein and yellow colour) assessed in a panel of 179 durum wheat lines (Triticum durum Desf.), grown under rainfed conditions in different Mediterranean environments in Southern Spain (Andalusia). The findings show a total of 37 marker-trait associations (MTAs) which affect phenotype expression for three quality traits (specific weight, gluten and sedimentation indexes). MTAs could be mapped on the A and B durum wheat subgenomes (on chromosomes 1A, 1B, 2A, 2B and 3A) through the recently available bread wheat reference assembly (IWGSC RefSeqv1). Two of the MTAs found for quality traits (gluten index and SDS) corresponded to the known Glu-B1 and Glu-A1 loci, for which candidate genes corresponding to high molecular weight glutenin subunits could be located. The GS prediction ability values obtained from the breeding materials analyzed showed promising results for traits as grain protein content, sedimentation and gluten indexes, which can be used in plant breeding programs.

Indexed as

Genes, PlantGenetic Association StudiesGenetic LociGenetic MarkersGenome-Wide Association StudyPlant BreedingQuantitative Trait, HeritableSpainTriticumGenetic Markers

Identifiers

PMID30811415
PMCPMC6392243

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.