Evidence map›Paper›PMID 30811189›Full record

ArticleJournal of the American Chemical Society2019

Discovery of Hydroxylase Activity for PqqB Provides a Missing Link in the Pyrroloquinoline Quinone Biosynthetic Pathway.

Eric M Koehn, John A Latham, Tara Armand, Robert L Evans, Xiongying Tu, Carrie M Wilmot, Anthony T Iavarone, Judith P Klinman

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Microbial synthesis of pyrroloquinoline quinone.World journal of microbiology & biotechnology · 2023
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Biological pincer complexes.ChemCatChem · 2020
    Article
  13. Article
  14. Article
  15. A two-component protease inThe Journal of biological chemistry · 2019
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Eric M KoehnDepartment of Chemistry and California Institute for Quantitative Biosciences , University of California-Berkeley , Berkeley , California 94720-3220 , United States.ORCID 0000-0001-8195-9595
John A LathamDepartment of Chemistry and California Institute for Quantitative Biosciences , University of California-Berkeley , Berkeley , California 94720-3220 , United States.ORCID 0000-0002-3034-1768
Tara ArmandDepartment of Chemistry and California Institute for Quantitative Biosciences , University of California-Berkeley , Berkeley , California 94720-3220 , United States.
Robert L EvansDepartment of Biochemistry, Molecular Biology, and Biophysics and The Biotechnology Institute , University of Minnesota , St. Paul , Minnesota 55108 , United States.
Xiongying TuDepartment of Biochemistry, Molecular Biology, and Biophysics and The Biotechnology Institute , University of Minnesota , St. Paul , Minnesota 55108 , United States.
Carrie M WilmotDepartment of Biochemistry, Molecular Biology, and Biophysics and The Biotechnology Institute , University of Minnesota , St. Paul , Minnesota 55108 , United States.ORCID 0000-0002-8706-0000
Anthony T IavaroneDepartment of Chemistry and California Institute for Quantitative Biosciences , University of California-Berkeley , Berkeley , California 94720-3220 , United States.
Judith P KlinmanDepartment of Chemistry and California Institute for Quantitative Biosciences , University of California-Berkeley , Berkeley , California 94720-3220 , United States.ORCID 0000-0001-5734-2843
QB3 · USUniversity of Minnesota · US

Funding

TRAINING PROGRAM IN MUSCLE RESEARCHT32AR007612 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JAMES M ERVASTI, DAWN A LOWE · 2001 to 2026
$11.3M
Looking in New Directions for Origins and Cryptic Mechanisms of Enzyme CatalysisR35GM118117 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KLINMAN, JUDITH P · 2016 to 2025
$7.5M
Catalysis and biogenesis in methylamine dehydrogenaseR01GM066569 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WILMOT, CAROLINE MARY · 2002 to 2015
$4.0M
High Definition Ion Mobility SpectrometerS10OD020062 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI WILLIAMS, EVAN R · 2015 to 2015
$590k
NIAMS NIH HHS T32 AR007612NIGMS NIH HHS R01 GM066569NIGMS NIH HHS R35 GM118117NIH HHS S10 OD020062
6 · The paper itself

Abstract

Understanding the biosynthesis of cofactors is fundamental to the life sciences, yet to date a few important pathways remain unresolved. One example is the redox cofactor pyrroloquinoline quinone (PQQ), which is critical for C1 metabolism in many microorganisms, a disproportionate number of which are opportunistic human pathogens. While the initial and final steps of PQQ biosynthesis, involving PqqD/E and PqqC, have been elucidated, the precise nature and order of the remaining transformations in the pathway are unknown. Here we show evidence that the remaining essential biosynthetic enzyme PqqB is an iron-dependent hydroxylase catalyzing oxygen-insertion reactions that are proposed to produce the quinone moiety of the mature PQQ cofactor. The demonstrated reactions of PqqB are unprecedented within the metallo β-lactamase protein family and expand the catalytic repertoire of nonheme iron hydroxylases. These new findings also generate a nearly complete description of the PQQ biosynthetic pathway.

Indexed as

Bacterial ProteinsCatalysisDihydroxyphenylalanineHydroxylationIronMethylobacterium extorquensMixed Function OxygenasesModels, ChemicalZinc5-S-cysteinyl-3,4-dihydroxyphenylalanineBacterial ProteinsDihydroxyphenylalanineIronMixed Function OxygenasesZinc

Identifiers

PMID30811189
PMCPMC6944208
OpenAlexW2918117362

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.