Evidence map›Paper›PMID 30810528›Full record

ArticleeLife2019

Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure.

Kumi Harada, Tetsuya Kotani, Hiromi Kirisako, Machiko Sakoh-Nakatogawa, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Hayashi Yamamoto, Yoshinori Ohsumi, Hitoshi Nakatogawa

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 71 citations in OpenAlex.

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  5. Omic AI reveals new autophagy regulators from the Atg1 interactome inFrontiers in cell and developmental biology · 2025
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  20. A dynamically evolving war between autophagy and pathogenic microorganisms.Journal of Zhejiang University. Science. B · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Kumi Harada *School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Tetsuya Kotani *School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Hiromi KirisakoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Machiko Sakoh-NakatogawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Yu OikawaInstitute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Yayoi KimuraAdvanced Medical Research Center, Yokohama City University, Yokohama, Japan.
Hisashi HiranoAdvanced Medical Research Center, Yokohama City University, Yokohama, Japan.
Hayashi Yamamoto
Yoshinori Ohsumi
Hitoshi NakatogawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.ORCID 0000-0002-5828-0741
Tokyo Institute of Technology · JPYokohama City University Medical Center · JPChinese Academy of Sciences · CNThe University of Tokyo · JP

Funding

Japan Science and Technology Agency JPMJCR13M7Ministry of Education, Culture, Sports, Science, and Technology 17H01430Ministry of Education, Culture, Sports, Science, and Technology 23000015Ministry of Education, Culture, Sports, Science, and Technology 25111003
6 · The paper itself

Abstract

In autophagy, Atg proteins organize the pre-autophagosomal structure (PAS) to initiate autophagosome formation. Previous studies in yeast revealed that the autophagy-related E3 complex Atg12-Atg5-Atg16 is recruited to the PAS via Atg16 interaction with Atg21, which binds phosphatidylinositol 3-phosphate (PI3P) produced at the PAS, to stimulate conjugation of the ubiquitin-like protein Atg8 to phosphatidylethanolamine. Here, we discover a novel mechanism for the PAS targeting of Atg12-Atg5-Atg16, which is mediated by the interaction of Atg12 with the Atg1 kinase complex that serves as a scaffold for PAS organization. While autophagy is partially defective without one of these mechanisms, cells lacking both completely lose the PAS localization of Atg12-Atg5-Atg16 and show no autophagic activity. As with the PI3P-dependent mechanism, Atg12-Atg5-Atg16 recruited via the Atg12-dependent mechanism stimulates Atg8 lipidation, but also has the specific function of facilitating PAS scaffold assembly. Thus, this study significantly advances our understanding of the nucleation step in autophagosome formation.

Indexed as

AutophagosomesAutophagyAutophagy-Related Protein 12Autophagy-Related Protein 5Autophagy-Related ProteinsEndopeptidasesGene DeletionMultiprotein ComplexesProtein BindingProtein KinasesProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsATG12 protein, S cerevisiaeATG16 protein, S cerevisiaeATG1 protein, S cerevisiaeATG21 protein, S cerevisiaeATG5 protein, S cerevisiaeAutophagy-Related Protein 12Autophagy-Related Protein 5Autophagy-Related ProteinsEndopeptidasesMultiprotein ComplexesProtein KinasesSaccharomyces cerevisiae ProteinsAtg proteinautophagosomeautophagycell biologyS. cerevisiaeubiquitin-like protein

Identifiers

PMID30810528
PMCPMC6405243
OpenAlexW2916667507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.