Evidence map›Paper›PMID 30809954›Full record

ArticleEnvironmental microbiology reports2019

Cyanophage MazG is a pyrophosphohydrolase but unable to hydrolyse magic spot nucleotides.

Branko Rihtman, Sabine Bowman-Grahl, Andrew Millard, Rebecca M Corrigan, Martha R J Clokie, David J Scanlan

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Branko RihtmanSchool of Life Sciences, University of Warwick, Coventry, UK.
Sabine Bowman-GrahlSchool of Life Sciences, University of Warwick, Coventry, UK.
Andrew MillardDepartment of Infection, Immunity and Inflammation, University of Leicester, Leicester, UK.
Rebecca M CorriganDepartment of Molecular Biology & Biotechnology, University of Sheffield, Sheffield, UK.
Martha R J ClokieDepartment of Infection, Immunity and Inflammation, University of Leicester, Leicester, UK.
David J ScanlanSchool of Life Sciences, University of Warwick, Coventry, UK.ORCID 0000-0003-3093-4245
University of Warwick · GBUniversity of Leicester · GBUniversity of Sheffield · GB

Funding

Medical Research Council MR/L015080/1Wellcome Trust
6 · The paper itself

Abstract

Bacteriophage possess a variety of auxiliary metabolic genes of bacterial origin. These proteins enable them to maximize infection efficiency, subverting bacterial metabolic processes for the purpose of viral genome replication and synthesis of the next generation of virion progeny. Here, we examined the enzymatic activity of a cyanophage MazG protein - a putative pyrophosphohydrolase previously implicated in regulation of the stringent response via reducing levels of the central alarmone molecule (p)ppGpp. We demonstrate, however, that the purified viral MazG shows no binding or hydrolysis activity against (p)ppGpp. Instead, dGTP and dCTP appear to be the preferred substrates of this protein, consistent with a role preferentially hydrolysing deoxyribonucleotides from the high GC content host Synechococcus genome. This showcases a new example of the fine-tuned nature of viral metabolic processes.

Indexed as

Amino Acid SequenceBacterial ProteinsBacteriophagesBase CompositionCatalytic DomainDeoxyribonucleotidesGenome, BacterialHydrolysisPhylogenyPyrophosphatasesRecombinant ProteinsSubstrate SpecificitySynechococcusViral ProteinsBacterial ProteinsDeoxyribonucleotidesPyrophosphatasesRecombinant ProteinsViral Proteins

Identifiers

PMID30809954
PMCPMC6850273
OpenAlexW2915523467

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.