Evidence map›Paper›PMID 30809014›Full record

ArticleScientific reports2019

Identifying Windows of Susceptibility by Temporal Gene Analysis.

Kristin P Bennett, Elisabeth M Brown, Hannah De Los Santos, Matthew Poegel, Thomas R Kiehl, Evan W Patton, Spencer Norris, Sally Temple, John Erickson, Deborah L McGuinness and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
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  8. ENCORE: A Visualization Tool for Insight into Circadian Omics.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2019
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Kristin P BennettDepartment of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA. bennek@rpi.edu.
Elisabeth M BrownDepartment of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Hannah De Los SantosDepartment of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Matthew PoegelDepartment of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Thomas R KiehlNeural Stem Cell Institute, Rensselaer, NY, 12144, USA.
Evan W PattonDepartment of Computer Science, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Spencer NorrisDepartment of Computer Science, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Sally TempleNeural Stem Cell Institute, Rensselaer, NY, 12144, USA.
John EricksonInstitute for Data Applications and Exploration, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Deborah L McGuinnessInstitute for Data Applications and Exploration, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.ORCID 0000-0001-7037-4567
Nathan C BolesNeural Stem Cell Institute, Rensselaer, NY, 12144, USA. nathanboles@neuralsci.org.
Rensselaer Polytechnic Institute · USNeural Stem Cell Institute · US

Funding

Statistical Services and Methods Development ResourceU2CES026555 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GENNINGS, CHRIS · 2015 to 2025
$26.4M
Defining Characteristics of Cortical Progenitor Cells over Time in Mouse and HumanR35NS097277 · NINDS · REGENERATIVE RESEARCH FOUNDATION · PI TEMPLE, SALLY · 2017 to 2024
$5.0M
The Development of a High-Throughput Assay to Screen Chemical Compounds in Human Pluripotent Stem Cell Derived Neural CellsR41ES026224 · NIEHS · ATHGHIN BIOTECHNOLOGY, INC. · PI BOLES, NATHAN C · 2015 to 2015
$222k
NINDS NIH HHS R35 NS097277U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) 0255-0236-4609U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) 1U2CES026555-01U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) 3U2CES026555-01S1U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R41ES026224U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R35NS097277
6 · The paper itself

Abstract

Increased understanding of developmental disorders of the brain has shown that genetic mutations, environmental toxins and biological insults typically act during developmental windows of susceptibility. Identifying these vulnerable periods is a necessary and vital step for safeguarding women and their fetuses against disease causing agents during pregnancy and for developing timely interventions and treatments for neurodevelopmental disorders. We analyzed developmental time-course gene expression data derived from human pluripotent stem cells, with disease association, pathway, and protein interaction databases to identify windows of disease susceptibility during development and the time periods for productive interventions. The results are displayed as interactive Susceptibility Windows Ontological Transcriptome (SWOT) Clocks illustrating disease susceptibility over developmental time. Using this method, we determine the likely windows of susceptibility for multiple neurological disorders using known disease associated genes and genes derived from RNA-sequencing studies including autism spectrum disorder, schizophrenia, and Zika virus induced microcephaly. SWOT clocks provide a valuable tool for integrating data from multiple databases in a developmental context with data generated from next-generation sequencing to help identify windows of susceptibility.

Indexed as

Gene Expression Regulation, DevelopmentalGenetic Predisposition to DiseaseTranscriptomeAutism Spectrum DisorderBrainChildDevelopmental DisabilitiesFemaleGenetic TestingHumansPluripotent Stem CellsPregnancySchizophreniaZika VirusZika Virus Infection

Identifiers

PMID30809014
PMCPMC6391370
OpenAlexW2915361613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.