Evidence map›Paper›PMID 30809001›Full record

ArticleScientific reports2019

Transcriptomic and genomic structural variation analyses on grape cultivars reveal new insights into the genotype-dependent responses to water stress.

C R Catacchio, F Alagna, R Perniola, C Bergamini, S Rotunno, F M Calabrese, P Crupi, D Antonacci, M Ventura, M F Cardone

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. The Role of Terroir on the Ripening Traits ofPlants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Grapevine response to aFrontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

C R CatacchioDipartimento di Biologia, Università degli Studi di Bari "Aldo Moro", Bari, Italy.
F AlagnaConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.ORCID 0000-0003-1878-2023
R PerniolaConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.
C BergaminiConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.
S RotunnoConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.
F M CalabreseDipartimento di Biologia, Università degli Studi di Bari "Aldo Moro", Bari, Italy.
P CrupiConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.
D AntonacciConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy.
M VenturaDipartimento di Biologia, Università degli Studi di Bari "Aldo Moro", Bari, Italy. mario.ventura@uniba.it.
M F CardoneConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA), Centro di ricerca Viticoltura ed Enologia, Turi (BA), Italy. mariafrancesca.cardone@crea.gov.it.ORCID 0000-0002-7597-7313

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine (Vitis vinifera L.) is importantly cultivated worldwide for table grape and wine production. Its cultivation requires irrigation supply, especially in arid and semiarid areas. Water deficiency can affect berry and wine quality mostly depending on the extent of plant perceived stress, which is a cultivar-specific trait. We tested the physiological and molecular responses to water deficiency of two table grape cultivars, Italia and Autumn royal, and we highlighted their different adaptation. Microarray analyses revealed that Autumn royal reacts involving only 29 genes, related to plant stress response and ABA/hormone signal transduction, to modulate the response to water deficit. Instead, cultivar Italia orchestrates a very broad response (we found 1037 differentially expressed genes) that modifies the cell wall organization, carbohydrate metabolism, response to reactive oxygen species, hormones and osmotic stress. For the first time, we integrated transcriptomic data with cultivar-specific genomics and found that ABA-perception and -signalling are key factors mediating the varietal-specific behaviour of the early response to drought. We were thus able to isolate candidate genes for the genotype-dependent response to drought. These insights will allow the identification of reliable plant stress indicators and the definition of sustainable cultivar-specific protocols for water management.

Indexed as

DehydrationDroughtsTranscriptomeCarbohydrate MetabolismCell WallGene Expression Regulation, PlantGenomic Structural VariationPlant Growth RegulatorsReactive Oxygen SpeciesSignal TransductionStress, PhysiologicalVitisPlant Growth RegulatorsReactive Oxygen Species

Identifiers

PMID30809001
PMCPMC6391451

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.