Evidence map›Paper›PMID 30808749›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome

Izumi Ishigami, Ariel Lewis-Ballester, Austin Echelmeier, Gerrit Brehm, Nadia A Zatsepin, Thomas D Grant, Jesse D Coe, Stella Lisova, Garrett Nelson, Shangji Zhang and 10 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Structural and functional mechanisms of cytochrome c oxidase.Journal of inorganic biochemistry · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Heme-copper and Heme OJournal of inorganic biochemistry · 2023
    Review
  14. Review
  15. Article
  16. Article
  17. Detection of a Geminate Photoproduct of Bovine CytochromeJournal of the American Chemical Society · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Izumi IshigamiDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461.ORCID 0000-0001-6929-1908
Ariel Lewis-BallesterDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461.
Austin EchelmeierBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Gerrit BrehmBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Nadia A ZatsepinBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Thomas D GrantHauptman-Woodward Institute and SUNY University of Buffalo, Buffalo, NY 14203.
Jesse D CoeBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Stella LisovaBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Garrett NelsonBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Shangji ZhangBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Zachary F DobsonBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Sébastien BoutetSLAC National Accelerator Laboratory, Menlo Park, CA 94025.
Raymond G SierraSLAC National Accelerator Laboratory, Menlo Park, CA 94025.
Alexander BatyukSLAC National Accelerator Laboratory, Menlo Park, CA 94025.ORCID 0000-0002-9393-2880
Petra FrommeBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Raimund FrommeBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
John C H SpenceBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Alexandra RosBiodesign Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287.
Syun-Ru YehDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461.ORCID 0000-0002-9858-386X
Denis L RousseauDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY 10461; denis.rousseau@einstein.yu.edu.

Funding

Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Structure and Function of Heme-based DioxygenasesR01GM115773 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI YEH, SYUN-RU · 2016 to 2023
$3.3M
Structures of time-resolved intermediates in cytochrome c oxidase obtained by serial femtosecond crystallographyR01GM126297 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DENIS L. ROUSSEAU · 2017 to 2026
$3.2M
Mechanisms of Energy Transduction in Heme-Copper OxidasesR01GM098799 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ROUSSEAU, DENIS L. · 2011 to 2014
$1.8M
3D NanoprinterS10OD021816 · OD · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI SPENCE, JOHN CHARLES · 2016 to 2016
$659k
NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM098799NIGMS NIH HHS R01 GM115773NIGMS NIH HHS R01 GM126297NIH HHS S10 OD021816
6 · The paper itself

Abstract

Cytochrome

Indexed as

AnimalsCatalysisCatalytic DomainCattleCopperCrystallography, X-RayElectron Transport Complex IVHemeIronOxidation-ReductionOxygenProtein ConformationCopperElectron Transport Complex IVHemeIronOxygenbioenergeticscatalytic intermediatescomplex IVcrystallographyX-ray free electron laser

Identifiers

PMID30808749
PMCPMC6397517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.